Gene Overview  


General information


Gene id
AT1G20960
Species
Arabidopsis thaliana
Transcript
AT1G20960.1
Coordinates
7302591 - 7309914
Strand
negative
Chromosome
1
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM000878   126 genes in 24 species
Sub family
ORTHO000475   57 genes in 24 species
Description
embryo defective 1507 (emb1507); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT2G42270.1); Has 19827 Blast hits to 11921 proteins in 1742 species: Archae - 1778; Bacteria - 7152; Metazoa - 2915; Fungi - 2450; Plants - 1068; Viruses - 118; Other Eukaryotes - 4346 (source: NCBI BLink).;U5 small nuclear ribonucleoprotein helicase, putative
Comment
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Functional annotation information


GO term(s)
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InterPro domain(s)
Interpro idDescription
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
IPR001650 DNA/RNA helicase, C-terminal
IPR018127 Sec63 domain, subgroup
IPR004179 Sec63 domain
IPR014021 Helicase, superfamily 1/2, ATP-binding domain
IPR003593 ATPase, AAA+ type, core
IPR014001 DEAD-like helicase, N-terminal
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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