Gene Overview 
General information
- Gene id
- AT1G20850
- Species
- Arabidopsis thaliana
- Transcript
- AT1G20850.1
- Coordinates
- 7252208 - 7253537
- Strand
- positive
- Chromosome
- 1
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000058 993 genes in 25 species
- Sub family
- ORTHO001647 36 genes in 18 species
- Duplication type
- Block duplicate
- Description
- xylem cysteine peptidase 2 (XCP2); FUNCTIONS IN: cysteine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis, developmental programmed cell death; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: xylem cysteine peptidase 1 (TAIR:AT4G35350.1); Has 7701 Blast hits to 7638 proteins in 709 species: Archae - 59; Bacteria - 219; Metazoa - 3282; Fungi - 4; Plants - 1889; Viruses - 133; Other Eukaryotes - 2115 (source: NCBI BLink).;xylem cysteine peptidase 2
- Comment
- transcripteqProtein informationCannot create amino acid sequence
- Gene structure
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Toolbox
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View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
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- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
-
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- InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR013128 Peptidase C1A, papain IPR000668 Peptidase C1A, papain C-terminal IPR013201 Proteinase inhibitor I29, cathepsin propeptide