Gene Overview 
General information
- Gene id
- AT1G15470
- Species
- Arabidopsis thaliana
- Transcript
- AT1G15470.1
- Coordinates
- 5315838 - 5317696
- Strand
- positive
- Chromosome
- 1
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM002501 51 genes in 23 species
- Sub family
- ORTHO001321 39 genes in 23 species
- Duplication type
- Block duplicate
- Description
- Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G15610.1); Has 41653 Blast hits to 22434 proteins in 735 species: Archae - 64; Bacteria - 7048; Metazoa - 15440; Fungi - 9730; Plants - 4355; Viruses - 0; Other Eukaryotes - 5016 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein
- Comment
- transcripteqProtein informationCannot create amino acid sequence
- Gene structure
-
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Toolbox
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- ...the colinearity of this gene with other genomes.
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- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
-
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- InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR017986 WD40-repeat-containing domain IPR011046 WD40 repeat-like-containing domain IPR001680 WD40 repeat IPR015943 WD40/YVTN repeat-like-containing domain IPR019782 WD40 repeat 2 IPR019775 WD40 repeat, conserved site IPR019781 WD40 repeat, subgroup