Gene Overview  


General information


Gene id
AT1G08540
Species
Arabidopsis thaliana
Transcript
AT1G08540.1
Coordinates
2703461 - 2706696
Strand
positive
Chromosome
1
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM001089   104 genes in 25 species
Sub family
ORTHO001774   35 genes in 25 species
Description
Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.;RNApolymerase sigma subunit 2
Comment
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Functional annotation information


GO term(s)
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Functional clusters
GO termDescriptionTypeExperimentCluster sizeNumber of genesE-value
GO:0044464cell partC_Hunter41492820.000991696
InterPro domain(s)
Interpro idDescription
IPR016262 RNA polymerase sigma factor, SigB/SigC/SigD, plastid
IPR007624 RNA polymerase sigma-70 region 3
IPR014284 RNA polymerase sigma-70
IPR007627 RNA polymerase sigma-70 region 2
IPR007630 RNA polymerase sigma-70 region 4
IPR011991 Winged helix-turn-helix transcription repressor DNA-binding
IPR013324 RNA polymerase sigma factor, region 3/4
IPR000943 RNA polymerase sigma-70 factor
IPR013325 RNA polymerase sigma factor, region 2
IPR009042 RNA polymerase sigma-70 region 1.2
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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