Gene Overview 
General information
- Gene id
- AL3G17950
- Species
- Arabidopsis lyrata
- Transcript
- AL3G17950.1
- Coordinates
- 7105558 - 7106727
- Strand
- positive
- Chromosome
- scaffold_3
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000209 361 genes in 2 species
- Sub family
- ORTHO043237 2 genes in 2 species
- Duplication type
- Tandem duplicate
- Comment
- namefgenesh2_kg.3__1843__AT3G16740.1Protein id479142Transcript id479142Protein informationCannot create amino acid sequence
- Gene structure
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Toolbox
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- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0009719 response to endogenous stimulus C_Hunter 1 28 71 8.07253e-16 GO:0009561 megagametogenesis C_Hunter 3 35 258 9.79911e-32 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR001810 Cyclin-like F-box IPR006527 F-box associated domain, type 1 IPR017451 F-box associated interaction domain