Gene Overview 
General information
- Gene id
- AL2G04320
- Species
- Arabidopsis lyrata
- Transcript
- AL2G04320.1
- Coordinates
- 2453133 - 2456265
- Strand
- positive
- Chromosome
- scaffold_2
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000006 3414 genes in 20 species
- Sub family
- ORTHO000083 128 genes in 18 species
- Duplication type
- Tandem duplicate and Block duplicate
- Comment
- nameAl_scaffold_0002_384Protein id875790Transcript id907303Protein informationCannot create amino acid sequence
- Gene structure
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Toolbox
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- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0048544 recognition of pollen C_Hunter 1 14 23 2.82643e-30 GO:0048544 recognition of pollen C_Hunter 3 14 23 2.82643e-30 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR001480 Curculin-like (mannose-binding) lectin IPR002290 Serine/threonine-protein kinase domain IPR020635 Tyrosine-protein kinase, catalytic domain IPR000719 Protein kinase, catalytic domain IPR003609 Apple-like IPR001245 Serine/threonine/tyrosine-protein kinase IPR000858 S-locus glycoprotein IPR013227 PAN-2 domain IPR021820 S-locus receptor kinase, C-terminal IPR011009 Protein kinase-like domain