Index of genes with 1 constraints:

GO term parent-child relationships are used in this table.

Page 11 of 227, showing 20 records out of 4526 total, starting on record 201, ending on 220

gene_id species description comment go evidence
AT5G64760 ath Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous genes RPN5a.;regulatory particle non-ATPase subunit 5B transcript=eq;prot=eq; GO:0006511 TAS
AT1G53750 ath 26S proteasome AAA-ATPase subunit RPT1a (RPT1a) mRNA,;regulatory particle triple-A 1A transcript=eq;prot=eq; GO:0006511 TAS
AT5G48990 ath encodes an F-box protein that interacts with SKP1 and likely to be involved in ubiquitin-mediated protein degradation.;Galactose oxidase/kelch repeat superfamily protein transcript=eq;prot=eq; GO:0006511 IDA
AT2G27650 ath Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT2G27630.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Ubiquitin carboxyl-terminal hydrolase-related protein transcript=eq;prot=eq; GO:0006511 IEA
AT5G02310 ath Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.;proteolysis 6 transcript=eq;prot=eq; GO:0006511 IDA
AT3G26340 ath N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; FUNCTIONS IN: endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: proteolysis involved in cellular protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit E1 (TAIR:AT1G13060.1); Has 6541 Blast hits to 6534 proteins in 612 species: Archae - 835; Bacteria - 512; Metazoa - 2083; Fungi - 1372; Plants - 865; Viruses - 0; Other Eukaryotes - 874 (source: NCBI BLink).;N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein transcript=eq;prot=eq; GO:0006511 ISS
AT4G24560 ath Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation.;ubiquitin-specific protease 16 transcript=eq;prot=eq; GO:0006511 IEA
AT1G53850 ath Encodes alpha5 subunit of 20s proteosome involved in protein degradation.;20S proteasome alpha subunit E1 transcript=eq;prot=eq; GO:0006511 TAS
AT1G76920 ath F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Kelch repeat type 2 (InterPro:IPR011498); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G61590.2); Has 279 Blast hits to 279 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 279; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; GO:0006511 TAS
AT3G47910 ath Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT3G47890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Ubiquitin carboxyl-terminal hydrolase-related protein transcript=eq;prot=eq; GO:0006511 IEA
AT4G31300 ath Encodes 20S proteasome subunit PBA1 (PBA1).;N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein transcript=eq;prot=eq; GO:0006511 TAS
AT3G47890 ath Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT3G47910.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Ubiquitin carboxyl-terminal hydrolase-related protein transcript=eq;prot=eq; GO:0006511 IEA
AT1G55060 ath Ubiquitin-like gene, believed to be a pseudogene because of amino acid substitutions in 3 of the 5 ubiquitin repeats found in the UBQ12 gene product;ubiquitin 12 transcript=eq;prot=eq; GO:0006511 ISS
AT3G61790 ath Protein with RING/U-box and TRAF-like domains; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Zinc finger, RING-type (InterPro:IPR001841), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT4G27880.1); Has 1836 Blast hits to 1817 proteins in 706 species: Archae - 0; Bacteria - 0; Metazoa - 1264; Fungi - 11; Plants - 486; Viruses - 2; Other Eukaryotes - 73 (source: NCBI BLink).;Protein with RING/U-box and TRAF-like domains transcript=eq;prot=eq; GO:0006511 ISS
AT5G66140 ath Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.;proteasome alpha subunit D2 transcript=eq;prot=eq; GO:0006511 TAS
AT4G38630 ath Regulatory particle non-ATPase subunit of the 26S proteasome with multiubiquitin-chain-binding capabilities;regulatory particle non-ATPase 10 transcript=eq;prot=eq; GO:0006511 TAS
AT2G45950 ath SKP1-like 20 (SK20); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: SKP1-like 21 (TAIR:AT3G61415.1); Has 1496 Blast hits to 1480 proteins in 265 species: Archae - 0; Bacteria - 13; Metazoa - 562; Fungi - 181; Plants - 479; Viruses - 9; Other Eukaryotes - 252 (source: NCBI BLink).;SKP1-like 20 transcript=eq;prot=eq; GO:0006511 IEA
AT4G31670 ath ubiquitin-specific protease 18 (UBP18); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 19 (TAIR:AT2G24640.1); Has 9064 Blast hits to 8065 proteins in 324 species: Archae - 2; Bacteria - 451; Metazoa - 4433; Fungi - 1481; Plants - 999; Viruses - 9; Other Eukaryotes - 1689 (source: NCBI BLink).;ubiquitin-specific protease 18 transcript=eq;prot=eq; GO:0006511 ISS
AT2G17020 ath F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT1G55590.1); Has 4669 Blast hits to 2409 proteins in 221 species: Archae - 0; Bacteria - 377; Metazoa - 1922; Fungi - 539; Plants - 1335; Viruses - 3; Other Eukaryotes - 493 (source: NCBI BLink).;F-box/RNI-like superfamily protein transcript=eq;prot=eq; GO:0006511 TAS
AT2G22310 ath Encodes a ubiquitin-specific protease.;ubiquitin-specific protease 4 transcript=eq;prot=eq; GO:0006511 IEA
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