Index of genes with 1 constraints:

GO term parent-child relationships are used in this table.

Page 17 of 240, showing 20 records out of 4787 total, starting on record 321, ending on 340

gene_id species description comment go evidence
AT1G49980 ath DNA/RNA polymerases superfamily protein; FUNCTIONS IN: damaged DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA repair; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, Y-family, little finger domain (InterPro:IPR017961), DNA-repair protein, UmuC-like (InterPro:IPR001126), DNA-repair protein, UmuC-like, N-terminal (InterPro:IPR017963); BEST Arabidopsis thaliana protein match is: DNA-directed DNA polymerases (TAIR:AT5G44750.1); Has 10430 Blast hits to 10220 proteins in 2419 species: Archae - 210; Bacteria - 6752; Metazoa - 626; Fungi - 433; Plants - 141; Viruses - 0; Other Eukaryotes - 2268 (source: NCBI BLink).;DNA/RNA polymerases superfamily protein transcript=eq;prot=eq; GO:0006281 ISS
AT1G15970 ath DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G80850.1); Has 3684 Blast hits to 3684 proteins in 1581 species: Archae - 10; Bacteria - 3170; Metazoa - 10; Fungi - 2; Plants - 164; Viruses - 0; Other Eukaryotes - 328 (source: NCBI BLink).;DNA glycosylase superfamily protein transcript=eq;prot=eq; GO:0006281 ISS
AT5G02370 ath ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, DNA binding, ATP binding; INVOLVED IN: DNA repair, microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT5G23910.1); Has 10070 Blast hits to 9659 proteins in 326 species: Archae - 0; Bacteria - 33; Metazoa - 4508; Fungi - 1335; Plants - 1813; Viruses - 0; Other Eukaryotes - 2381 (source: NCBI BLink).;ATP binding microtubule motor family protein transcript=eq;prot=eq; GO:0006281 IEA
AT3G28600 ath P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28610.1); Has 21037 Blast hits to 19726 proteins in 2862 species: Archae - 1274; Bacteria - 7399; Metazoa - 2914; Fungi - 2841; Plants - 2424; Viruses - 34; Other Eukaryotes - 4151 (source: NCBI BLink).;P-loop containing nucleoside triphosphate hydrolases superfamily protein transcript=eq;prot=eq; GO:0006281 IEA
AT5G64580 ath AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, metalloendopeptidase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 43409 Blast hits to 41131 proteins in 3311 species: Archae - 1622; Bacteria - 19384; Metazoa - 4934; Fungi - 3903; Plants - 3224; Viruses - 61; Other Eukaryotes - 10281 (source: NCBI BLink).;AAA-type ATPase family protein transcript=eq;prot=eq; GO:0006281 IEA
AT1G08130 ath Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus.;DNA ligase 1 transcript=eq;prot=eq; GO:0006281 IEA
AT4G31400 ath Encodes CTF7, a homolog of the yeast CTF protein required for the formation of sister chromatid cohesion. Arabidopsis CTF7 is similar to Saccharomyces cerevisiae CTF7 in that it lacks an N-terminal extension, exhibits acetyltransferase activity, and can complement a yeast ctf7 temperature-sensitive mutation. Arabidopsis CTF7 is critical for female gametophyte and embryo development, but not for the establishment of mitotic cohesion during microgametogenesis or during endosperm development.;damaged DNA binding;DNA-directed DNA polymerases transcript=eq;prot=eq; GO:0006281 IEA
AT3G10140 ath RECA homolog 3 (RECA3); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, SOS response, DNA recombination, DNA metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), ATPase, AAA+ type, core (InterPro:IPR003593), DNA recombination and repair protein RecA (InterPro:IPR013765), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587); BEST Arabidopsis thaliana protein match is: recA DNA recombination family protein (TAIR:AT2G19490.1); Has 19406 Blast hits to 19280 proteins in 5632 species: Archae - 329; Bacteria - 14407; Metazoa - 165; Fungi - 231; Plants - 211; Viruses - 99; Other Eukaryotes - 3964 (source: NCBI BLink).;RECA homolog 3 transcript=eq;prot=eq; GO:0006281 ISS
AT1G18340 ath basal transcription factor complex subunit-related; FUNCTIONS IN: general RNA polymerase II transcription factor activity; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: core TFIIH complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor Tfb4 (InterPro:IPR004600); Has 359 Blast hits to 354 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 143; Plants - 47; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).;basal transcription factor complex subunit-related transcript=eq;prot=eq; GO:0006281 IEA
AT3G18630 ath Encodes a uracil-DNA glycosylase (UDG) involved in a base excision DNA repair pathway in mitochondria.;uracil dna glycosylase transcript=eq;prot=eq; GO:0006281 ISS
AT2G31970 ath Encodes the Arabidopsis RAD50 homologue. It is involved in double strand break repair. Component of the meiotic recombination complex that processes meiotic double-strand-breaks to produce single-stranded DNA ends, which act in the homology search and recombination. Accumulates in the nucleus during meiotic prophase, a process regulated by PHS1.;DNA repair-recombination protein (RAD50) transcript=eq;prot=eq; GO:0006281 ISS
AT1G27840 ath Encodes a DDB1a interacting protein ATCSA-1 required for UV-B tolerance and genomic integrity.;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; GO:0006281 IMP
AT3G28030 ath Required for repair of pyrimidine-pyrimidinone (6-4) dimers.;5'-3' exonuclease family protein transcript=eq;prot=eq; GO:0006281 ISS
AT5G66130 ath Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths.;RADIATION SENSITIVE 17 transcript=eq;prot=eq; GO:0006281 IEA
AT3G10010 ath Encodes a protein with DNA glycosylase activity that is involved in maintaining methylation marks.;demeter-like 2 transcript=eq;prot=eq; GO:0006281 IEA
AT1G18090 ath 5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974), XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G29630.2); Has 2134 Blast hits to 2045 proteins in 397 species: Archae - 265; Bacteria - 69; Metazoa - 518; Fungi - 574; Plants - 189; Viruses - 16; Other Eukaryotes - 503 (source: NCBI BLink).;5'-3' exonuclease family protein transcript=eq;prot=eq; GO:0006281 ISS
AT3G02060 ath DEAD/DEAH box helicase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription-repair-coupling factor (InterPro:IPR005118), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Transcription factor CarD (InterPro:IPR003711), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT2G01440.1); Has 31166 Blast hits to 30948 proteins in 2896 species: Archae - 262; Bacteria - 19852; Metazoa - 1558; Fungi - 988; Plants - 649; Viruses - 13; Other Eukaryotes - 7844 (source: NCBI BLink).;DEAD/DEAH box helicase, putative transcript=eq;prot=eq; GO:0006281 IEA
AT1G49250 ath ATP-dependent DNA ligase; FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, DNA recombination, DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059), ATP-dependent DNA ligase (InterPro:IPR000977); BEST Arabidopsis thaliana protein match is: DNA ligase 1 (TAIR:AT1G08130.1); Has 3343 Blast hits to 3310 proteins in 864 species: Archae - 299; Bacteria - 1362; Metazoa - 364; Fungi - 424; Plants - 106; Viruses - 161; Other Eukaryotes - 627 (source: NCBI BLink).;ATP-dependent DNA ligase transcript=eq;prot=eq; GO:0006281 IEA
AT2G19480 ath This gene is predicted to encode a nucleosome assembly protein. Plant lines expressing an RNAi construct directed against this gene show a reduction in agrobacterium-mediated root transformation.;nucleosome assembly protein 1;2 transcript=eq;prot=eq; GO:0006281 IGI
AT2G19490 ath recA DNA recombination family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, SOS response, DNA recombination, DNA metabolic process; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), ATPase, AAA+ type, core (InterPro:IPR003593), DNA recombination/repair protein RecA, conserved site (InterPro:IPR020584), DNA recombination and repair protein RecA (InterPro:IPR013765), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G32920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;recA DNA recombination family protein transcript=eq;prot=eq; GO:0006281 ISS
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