Index of genes with 2 constraints:
View genome wide organization

Page 1 of 13, showing 20 records out of 242 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AT1G02310 ath Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT5G66460.1); Has 762 Blast hits to 752 proteins in 193 species: Archae - 9; Bacteria - 223; Metazoa - 4; Fungi - 190; Plants - 306; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).;Glycosyl hydrolase superfamily protein transcript=eq;prot=eq; - 1 Yes
AT1G03510 ath Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 33405 Blast hits to 13221 proteins in 227 species: Archae - 0; Bacteria - 37; Metazoa - 55; Fungi - 85; Plants - 32781; Viruses - 0; Other Eukaryotes - 447 (source: NCBI BLink).;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; - 1 No
AT1G03540 ath Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G13600.1); Has 43035 Blast hits to 14042 proteins in 228 species: Archae - 0; Bacteria - 19; Metazoa - 59; Fungi - 97; Plants - 42229; Viruses - 0; Other Eukaryotes - 631 (source: NCBI BLink).;Pentatricopeptide repeat (PPR-like) superfamily protein transcript=eq;prot=eq; + 1 No
AT1G04840 ath Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G74630.1); Has 39151 Blast hits to 14409 proteins in 285 species: Archae - 0; Bacteria - 8; Metazoa - 167; Fungi - 139; Plants - 38292; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink).;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; - 1 No
AT1G05750 ath Encodes a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts.;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; + 1 No
AT1G06140 ath Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33990.1); Has 38916 Blast hits to 13813 proteins in 232 species: Archae - 0; Bacteria - 13; Metazoa - 106; Fungi - 93; Plants - 38173; Viruses - 0; Other Eukaryotes - 531 (source: NCBI BLink).;Pentatricopeptide repeat (PPR) superfamily protein transcript=eq;prot=eq; + 1 No
AT1G06150 ath EMBRYO DEFECTIVE 1444 (EMB1444); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 7 (TAIR:AT2G31280.1); Has 563 Blast hits to 411 proteins in 68 species: Archae - 0; Bacteria - 54; Metazoa - 32; Fungi - 13; Plants - 398; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; - 1 No
AT1G08070 ath Encodes a chloroplast RNA editing factor.;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; - 1 No
AT1G09190 ath Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, sperm cell, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; - 1 No
AT1G09220 ath Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 31696 Blast hits to 12551 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 19; Plants - 31380; Viruses - 0; Other Eukaryotes - 282 (source: NCBI BLink).;Pentatricopeptide repeat (PPR) superfamily protein transcript=eq;prot=eq; - 1 No
AT1G09410 ath pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G56690.1); Has 49310 Blast hits to 14061 proteins in 238 species: Archae - 0; Bacteria - 33; Metazoa - 32; Fungi - 36; Plants - 48709; Viruses - 0; Other Eukaryotes - 500 (source: NCBI BLink).;pentatricopeptide (PPR) repeat-containing protein transcript=eq;prot=eq; + 1 No
AT1G10330 ath Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1); Has 31141 Blast hits to 12595 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 42; Plants - 30558; Viruses - 0; Other Eukaryotes - 478 (source: NCBI BLink).;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; + 1 No
AT1G11290 ath Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.;Pentatricopeptide repeat (PPR) superfamily protein transcript=eq;prot=eq; - 1 No
AT1G13410 ath Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G02750.1); Has 37390 Blast hits to 13439 proteins in 200 species: Archae - 0; Bacteria - 4; Metazoa - 27; Fungi - 54; Plants - 36888; Viruses - 0; Other Eukaryotes - 417 (source: NCBI BLink).;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; + 1 No
AT1G14470 ath Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G08070.1); Has 45588 Blast hits to 14013 proteins in 255 species: Archae - 1; Bacteria - 22; Metazoa - 282; Fungi - 244; Plants - 44188; Viruses - 0; Other Eukaryotes - 851 (source: NCBI BLink).;Pentatricopeptide repeat (PPR) superfamily protein transcript=eq;prot=eq; + 1 No
AT1G15510 ath Encodes a pentatricopeptide repeat protein required for chloroplast transcript accD RNA editing and early chloroplast biogenesis.;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; + 1 No
AT1G16480 ath Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 59612 Blast hits to 13645 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 112; Fungi - 34; Plants - 58832; Viruses - 0; Other Eukaryotes - 630 (source: NCBI BLink).;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; - 1 No
AT1G17630 ath Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G20230.1); Has 40851 Blast hits to 13793 proteins in 242 species: Archae - 0; Bacteria - 7; Metazoa - 93; Fungi - 89; Plants - 40145; Viruses - 0; Other Eukaryotes - 517 (source: NCBI BLink).;Pentatricopeptide repeat (PPR-like) superfamily protein transcript=eq;prot=eq; + 1 No
AT1G18485 ath Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 47794 Blast hits to 13382 proteins in 245 species: Archae - 0; Bacteria - 5; Metazoa - 44; Fungi - 66; Plants - 47218; Viruses - 0; Other Eukaryotes - 461 (source: NCBI BLink).;Pentatricopeptide repeat (PPR) superfamily protein transcript=eq;prot=eq; + 1 No
AT1G19720 ath Pentatricopeptide repeat (PPR-like) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast, cytoplasm; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 61333 Blast hits to 15549 proteins in 316 species: Archae - 3; Bacteria - 46; Metazoa - 404; Fungi - 515; Plants - 59134; Viruses - 0; Other Eukaryotes - 1231 (source: NCBI BLink).;Pentatricopeptide repeat (PPR-like) superfamily protein transcript=eq;prot=eq; - 1 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier