Anchorpoints

Gene id
TC06G013980
Organism
Theobroma cacao

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
TC01G008920Tc01-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G23880scaffold_7+View
AL4G01750scaffold_4+View
AL8G02700scaffold_8-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT2G22290RAB GTPase homolog H1D (RABH1d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: mitochondrion; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab6-related (InterPro:IPR015600); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog H1E (TAIR:AT5G10260.1); Has 26960 Blast hits to 26930 proteins in 721 species: Archae - 17; Bacteria - 142; Metazoa - 14130; Fungi - 3768; Plants - 3162; Viruses - 20; Other Eukaryotes - 5721 (source: NCBI BLink).;RAB GTPase homolog H1D2+View
AT5G45750RAB GTPase homolog A1C (RABA1c); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, nucleus, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1D (TAIR:AT4G18800.1); Has 28355 Blast hits to 28298 proteins in 771 species: Archae - 32; Bacteria - 162; Metazoa - 14720; Fungi - 4238; Plants - 3283; Viruses - 20; Other Eukaryotes - 5900 (source: NCBI BLink).;RAB GTPase homolog A1C5+View
AT5G45970Encodes a Rac-like protein ARAC2. A member of ROP GTPase gene family.;RAC-like 25+View
AT5G46025Ras-related small GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1E (TAIR:AT4G18430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Ras-related small GTP-binding family protein5-View
AT4G18800RAB GTPase homolog A1D (RABA1d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1C (TAIR:AT5G45750.1); Has 27980 Blast hits to 27923 proteins in 754 species: Archae - 26; Bacteria - 162; Metazoa - 14618; Fungi - 4214; Plants - 3069; Viruses - 20; Other Eukaryotes - 5871 (source: NCBI BLink).;RAB GTPase homolog A1D4-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD2G49900GTPase activity (Blast2GO)Bd2+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00052G01440supercontig_52-View
CP00075G00600supercontig_75+View
CP00077G00250supercontig_77-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV6G23500Ras-related protein Rab11DLG6-View
FV3G14480Ras-related protein RABA1c (putative)LG3-View
FV3G18820Ras-related protein Rab11D (putative)LG3-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM12G3597012Gm12-View
GM20G3115020Gm20-View
GM13G2414013Gm13+View
GM13G2416013Gm13+View
GM13G3441013Gm13+View
GM20G3232020Gm20+View
GM13G3653013Gm13+View
GM12G3400012Gm12-View
GM10G3523010Gm10-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ3G003320chr3-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD09G0228909+View
MD10G02215010+View
MD05G0058505-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME04003G00040scaffold04003-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS06G35814ras%2Drelated protein, putative, expressed6-View
OS01G54590ras%2Drelated protein, putative, expressed1+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_06G31500source=BGI China;type=FgeneSH;Chr06-View
OSINDICA_01G51530source=BGI China;type=FgeneSH;Chr01+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT04G05750PACid=17345718;name=POPTR_0004s05940;alias=pt007401m;scaffold_4+View
PT11G06780PACid=17340819;name=POPTR_0011s06970;alias=pt015023m;scaffold_11-View
PT11G06790PACid=17305515;name=POPTR_0011s06980;alias=pt014863m;scaffold_11-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30026G0026030026-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB06G0196206chr_6+View
SB10G02173010chr_10-View

Selaginella moellendorffii

Gene id Description Chromosome Strand Multiplicon
SM00002G02260scaffold_2+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV10G02470name=GSVIVG01021253001;chr10-View
VV19G01690name=GSVIVG01014181001;chr19+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM09G00600Rho-related protein from plants 5 9-View


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Gene id
Species
Description
Chromosome
Strand