Anchorpoints

Gene id
TC05G030170
Organism
Theobroma cacao

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
TC04G028080Tc04+View
TC01G030240Tc01+View
TC01G030310Tc01+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL6G27540scaffold_6-View
AL3G05400scaffold_3+View
AL3G05410scaffold_3+View
AL7G27790scaffold_7-View
AL3G17720scaffold_3+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G02900Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. Mediates Ca2+-dependent signaling.;rapid alkalinization factor 11-View
AT4G15800Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.;ralf-like 334+View
AT3G16570Encodes RALF23, a member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. RALF23 is significantly downregulated by brassinolide treatment of seedlings. Overexpression of AtRALF23 impairs brassinolide-induced hypocotyls elongation, and mature overexpressing plants are shorter and bushier. RALF23 overexpression produces slower growing seedlings with roots that have reduced capacity to acidify the rhizosphere.;rapid alkalinization factor 233+View
AT3G05490Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.;ralf-like 223+View
AT3G05500Rubber elongation factor protein (REF); INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: Rubber elongation factor protein (REF) (TAIR:AT2G47780.1); Has 129 Blast hits to 129 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Rubber elongation factor protein (REF)3+View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD2G59800Bd2-View
BD1G62710Bd1+View
BD1G18170Bd1-View
BD1G18185Bd1-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00016G01730supercontig_16-View
CP00048G00900supercontig_48+View
CP00048G00910supercontig_48+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV2G27790Stress-related protein (putative)LG2+View
FV4G12900Fibrillin-2, Precursor (probable)LG4+View
FV6G05020REF/SRPP-like protein At3g05500 (probable)LG6-View
FV6G05030E3 ubiquitin-protein ligase SINAT5 (similar to)LG6-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM07G3769007Gm07-View
GM19G4220019Gm19-View
GM17G0294017Gm17+View
GM10G2926010Gm10-View
GM03G3958003Gm03-View
GM19G3973019Gm19+View
GM03G3711003Gm03+View
GM20G3802020Gm20+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ0G457590chr0-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD03G0242603+View
MD03G0243003+View
MD13G01561013-View
MD04G0164104-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME04457G00940scaffold04457-View
ME01551G03580scaffold01551+View
ME03614G04990scaffold03614+View
ME03614G05000scaffold03614+View
ME11110G00210scaffold11110+View
ME11110G00230scaffold11110+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT7G113080Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008801 Rapid ALkalinization Factor7-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS07G47510stress%2Drelated protein, putative, expressed7+View
OS01G70690RALFL1 %2D Rapid ALkalinization Factor RALF family protein precursor, putative1-View
OS01G15320RALFL9 %2D Rapid ALkalinization Factor RALF family protein precursor, expressed1-View
OS03G22440RALFL15 %2D Rapid ALkalinization Factor RALF family protein precursor, putative3-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_03G21630source=BGI China;type=FgeneSH;Chr03-View
OSINDICA_01G67060source=BGI China;type=FgeneSH;Chr01-View
OSINDICA_07G39360source=BGI China;type=FgeneSH;Chr07+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT13G01610PACid=17332020;name=POPTR_0013s01800;alias=pt031106m,grail3.0016015401,Pt-SRPP.2;scaffold_13-View
PT13G01620PACid=17340247;name=POPTR_0013s01810;alias=pt031417m,estExt_Genewise1_v1.C_LG_XIII0862,Pt-RALFL23.3;scaffold_13-View
PT14G12440PACid=17302251;name=POPTR_0014s12630;alias=pt036504m,gw1.XIV.2623.1;scaffold_14-View
PT05G02390PACid=17311140;name=POPTR_0005s02580;alias=pt033721m,grail3.0133002701,Pt-SRPP.3;scaffold_5-View
PT05G02400PACid=17329391;name=POPTR_0005s02590;alias=pt034269m,Pt-RALFL23.2,grail3.0133002601;scaffold_5-View
PT02G20560PACid=17339885;name=POPTR_0002s20750;alias=pt021396m,eugene3.00021740;scaffold_2-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29726G0148029726+View
RC30128G0214030128+View
RC30128G0215030128+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB03G0143603chr_3-View
SB03G0449203chr_3-View
SB03G0449303chr_3-View
SB01G0356001chr_1+View
SB02G0425302chr_2+View
SB02G0425502chr_2+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV14G08850name=GSVIVG01031147001;chr14-View
VV14G08860name=GSVIVG01031148001;chr14-View
VV05G03110name=GSVIVG01017757001;chr5+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM02G407102+View
ZM07G298707+View
ZM01G15170rapid ALkalinization Factor family protein 1-View


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Gene id
Species
Description
Chromosome
Strand