Anchorpoints
- Gene id
- TC05G005080
- Organism
- Theobroma cacao
Paralogs (intra-species colinear regions)
Gene id
Description
Chromosome
Strand
Multiplicon
TC09G032200 Tc09 + View TC10G003730 Tc10 + View
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id
Description
Chromosome
Strand
Multiplicon
AL5G14300 scaffold_5 + View AL5G23640 scaffold_5 - View AL8G26020 scaffold_8 - View
Arabidopsis thaliana
Gene id
Description
Chromosome
Strand
Multiplicon
AT5G59840 Ras-related small GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 8A (TAIR:AT3G46060.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Ras-related small GTP-binding family protein 5 - View AT3G53610 GTPase AtRAB8 (atrab8);RAB GTPase homolog 8 3 - View AT3G46060 small GTP-binding protein (ara-3);RAB GTPase homolog 8A 3 + View
Brachypodium distachyon
Gene id
Description
Chromosome
Strand
Multiplicon
BD2G23120 GTPase activity (Blast2GO) Bd2 + View BD1G03820 GTPase activity (Blast2GO) Bd1 - View
Carica papaya
Gene id
Description
Chromosome
Strand
Multiplicon
CP00190G00270 supercontig_190 + View
Fragaria vesca
Gene id
Description
Chromosome
Strand
Multiplicon
FV0G31900 Ras-related protein ARA-3 (similar to) scf0513178 + View FV6G13740 Ras-related protein ARA-3 (similar to) LG6 + View
Glycine max
Gene id
Description
Chromosome
Strand
Multiplicon
GM18G52450 18 Gm18 - View GM13G40870 13 Gm13 - View GM10G34120 10 Gm10 - View GM15G01780 15 Gm15 + View GM04G39030 04 Gm04 - View GM10G43590 10 Gm10 + View GM02G10450 02 Gm02 + View GM15G04560 15 Gm15 + View GM12G07070 12 Gm12 + View GM11G15120 11 Gm11 + View
Lotus japonicus
Gene id
Description
Chromosome
Strand
Multiplicon
LJ5G031480 chr5 - View
Malus domestica
Gene id
Description
Chromosome
Strand
Multiplicon
MD04G008790 4 - View
Manihot esculenta
Gene id
Description
Chromosome
Strand
Multiplicon
ME06705G00550 scaffold06705 - View ME03687G00030 scaffold03687 - View ME03687G00040 scaffold03687 - View ME08265G01680 scaffold08265 - View
Medicago truncatula
Gene id
Description
Chromosome
Strand
Multiplicon
MT7G100020 Ras-like protein (Fragment) (AHRD V1 *-*- Q8SAF8_9STRA); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type 7 + View MT2G096550 Ras-related protein ARA-3 (AHRD V1 ***- P28186); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type 2 - View MT4G063160 Small GTP-binding protein (AHRD V1 **-* Q41022_PEA); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type 4 - View
Oryza sativa ssp. japonica
Gene id
Description
Chromosome
Strand
Multiplicon
OS03G60530 ras%2Drelated protein, putative, expressed 3 + View OS03G60870 ras%2Drelated protein, putative, expressed 3 - View
Oryza sativa ssp. indica
Gene id
Description
Chromosome
Strand
Multiplicon
OSINDICA_03G57740 source=BGI China;type=FgeneSH; Chr03 + View OSINDICA_03G58050 source=BGI China;type=FgeneSH; Chr03 - View OSINDICA_05G34460 source=BGI China;type=FgeneSH; Chr05 - View
Populus trichocarpa
Gene id
Description
Chromosome
Strand
Multiplicon
PT01G23530 PACid=17309775;name=POPTR_0001s24290;alias=pt040115m,Pt-RAB8.2,estExt_fgenesh4_pm.C_LG_I0698; scaffold_1 - View PT10G20460 PACid=17315476;name=POPTR_0010s21600;alias=pt013558m; scaffold_10 + View PT08G04970 PACid=17323535;name=POPTR_0008s05160;alias=pt028447m; scaffold_8 - View PT09G03110 PACid=17319023;name=POPTR_0009s03300;alias=pt005127m,estExt_Genewise1_v1.C_LG_IX4312,Pt-RAB8.1; scaffold_9 - View
Sorghum bicolor
Gene id
Description
Chromosome
Strand
Multiplicon
SB09G022670 9 chr_9 - View SB01G003310 1 chr_1 - View
Vitis vinifera
Gene id
Description
Chromosome
Strand
Multiplicon
VV06G04090 name=GSVIVG01025028001; chr6 - View VV13G05680 name=GSVIVG01016596001; chr13 - View VV08G02360 name=GSVIVG01025619001; chr8 + View
Zea mays
Gene id
Description
Chromosome
Strand
Multiplicon
ZM05G35320 Putative uncharacterized protein 5 + View
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TC09G032200 | Tc09 | + | View | |
| TC10G003730 | Tc10 | + | View |
Arabidopsis lyrata
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AL5G14300 | scaffold_5 | + | View | |
| AL5G23640 | scaffold_5 | - | View | |
| AL8G26020 | scaffold_8 | - | View |
Arabidopsis thaliana
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT5G59840 | Ras-related small GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 8A (TAIR:AT3G46060.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Ras-related small GTP-binding family protein | 5 | - | View |
| AT3G53610 | GTPase AtRAB8 (atrab8);RAB GTPase homolog 8 | 3 | - | View |
| AT3G46060 | small GTP-binding protein (ara-3);RAB GTPase homolog 8A | 3 | + | View |
Brachypodium distachyon
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BD2G23120 | GTPase activity (Blast2GO) | Bd2 | + | View |
| BD1G03820 | GTPase activity (Blast2GO) | Bd1 | - | View |
Carica papaya
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CP00190G00270 | supercontig_190 | + | View |
Fragaria vesca
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| FV0G31900 | Ras-related protein ARA-3 (similar to) | scf0513178 | + | View |
| FV6G13740 | Ras-related protein ARA-3 (similar to) | LG6 | + | View |
Glycine max
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GM18G52450 | 18 | Gm18 | - | View |
| GM13G40870 | 13 | Gm13 | - | View |
| GM10G34120 | 10 | Gm10 | - | View |
| GM15G01780 | 15 | Gm15 | + | View |
| GM04G39030 | 04 | Gm04 | - | View |
| GM10G43590 | 10 | Gm10 | + | View |
| GM02G10450 | 02 | Gm02 | + | View |
| GM15G04560 | 15 | Gm15 | + | View |
| GM12G07070 | 12 | Gm12 | + | View |
| GM11G15120 | 11 | Gm11 | + | View |
Lotus japonicus
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| LJ5G031480 | chr5 | - | View |
Malus domestica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MD04G008790 | 4 | - | View |
Manihot esculenta
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ME06705G00550 | scaffold06705 | - | View | |
| ME03687G00030 | scaffold03687 | - | View | |
| ME03687G00040 | scaffold03687 | - | View | |
| ME08265G01680 | scaffold08265 | - | View |
Medicago truncatula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MT7G100020 | Ras-like protein (Fragment) (AHRD V1 *-*- Q8SAF8_9STRA); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type | 7 | + | View |
| MT2G096550 | Ras-related protein ARA-3 (AHRD V1 ***- P28186); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type | 2 | - | View |
| MT4G063160 | Small GTP-binding protein (AHRD V1 **-* Q41022_PEA); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type | 4 | - | View |
Oryza sativa ssp. japonica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| OS03G60530 | ras%2Drelated protein, putative, expressed | 3 | + | View |
| OS03G60870 | ras%2Drelated protein, putative, expressed | 3 | - | View |
Oryza sativa ssp. indica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| OSINDICA_03G57740 | source=BGI China;type=FgeneSH; | Chr03 | + | View |
| OSINDICA_03G58050 | source=BGI China;type=FgeneSH; | Chr03 | - | View |
| OSINDICA_05G34460 | source=BGI China;type=FgeneSH; | Chr05 | - | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT01G23530 | PACid=17309775;name=POPTR_0001s24290;alias=pt040115m,Pt-RAB8.2,estExt_fgenesh4_pm.C_LG_I0698; | scaffold_1 | - | View |
| PT10G20460 | PACid=17315476;name=POPTR_0010s21600;alias=pt013558m; | scaffold_10 | + | View |
| PT08G04970 | PACid=17323535;name=POPTR_0008s05160;alias=pt028447m; | scaffold_8 | - | View |
| PT09G03110 | PACid=17319023;name=POPTR_0009s03300;alias=pt005127m,estExt_Genewise1_v1.C_LG_IX4312,Pt-RAB8.1; | scaffold_9 | - | View |
Sorghum bicolor
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SB09G022670 | 9 | chr_9 | - | View |
| SB01G003310 | 1 | chr_1 | - | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV06G04090 | name=GSVIVG01025028001; | chr6 | - | View |
| VV13G05680 | name=GSVIVG01016596001; | chr13 | - | View |
| VV08G02360 | name=GSVIVG01025619001; | chr8 | + | View |
Zea mays
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ZM05G35320 | Putative uncharacterized protein | 5 | + | View |