Anchorpoints
- Gene id
- RC29842G00810
- Organism
- Ricinus communis
Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id
Description
Chromosome
Strand
Multiplicon
AL6G36470 scaffold_6 - View AL2G03420 scaffold_2 - View AL7G20400 scaffold_7 - View
Arabidopsis thaliana
Gene id
Description
Chromosome
Strand
Multiplicon
AT4G21980 Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced carbon starvation. Predominantly cytoplasmic with or without N starvation. Upon concanamycin A the protein accumulates in the central vacuole as punctuate structures that resemble autophagic bodies. This localization is more abundant upon N starvation.;Ubiquitin-like superfamily protein 4 + View AT4G04620 autophagy 8b (ATG8B); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G21980.2); Has 1515 Blast hits to 1513 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 720; Fungi - 178; Plants - 303; Viruses - 3; Other Eukaryotes - 311 (source: NCBI BLink).;Ubiquitin-like superfamily protein 4 - View AT1G62040 autophagy 8c (ATG8C); FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G21980.2).;Ubiquitin-like superfamily protein 1 + View
Brachypodium distachyon
Gene id
Description
Chromosome
Strand
Multiplicon
BD1G26400 beta-tubulin binding, microtubule binding (Blast2GO) Bd1 + View BD3G14980 beta-tubulin binding, microtubule binding (Blast2GO) Bd3 - View
Carica papaya
Gene id
Description
Chromosome
Strand
Multiplicon
CP00012G02960 supercontig_12 - View CP00152G00200 supercontig_152 + View CP00087G00730 supercontig_87 + View
Fragaria vesca
Gene id
Description
Chromosome
Strand
Multiplicon
FV3G25370 Autophagy-related protein 8C, Precursor (putative) LG3 + View FV3G01100 Autophagy-related protein 8C, Precursor (putative) LG3 + View
Glycine max
Gene id
Description
Chromosome
Strand
Multiplicon
GM17G01650 17 Gm17 - View GM06G46270 06 Gm06 + View GM15G11510 15 Gm15 + View GM07G39090 07 Gm07 + View GM12G10510 12 Gm12 - View GM09G00630 09 Gm09 + View
Malus domestica
Gene id
Description
Chromosome
Strand
Multiplicon
MD05G001430 5 - View MD03G017160 3 - View MD11G018190 11 - View MD11G018200 11 - View
Manihot esculenta
Gene id
Description
Chromosome
Strand
Multiplicon
ME02717G00020 scaffold02717 + View ME03241G00250 scaffold03241 - View ME03241G00260 scaffold03241 - View ME06598G00170 scaffold06598 + View
Medicago truncatula
Gene id
Description
Chromosome
Strand
Multiplicon
MT2G088230 Autophagy-related protein 8B (AHRD V1 ***- Q7XPR1); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) 2 - View
Oryza sativa ssp. japonica
Gene id
Description
Chromosome
Strand
Multiplicon
OS07G32800 autophagy%2Drelated protein, putative, expressed 7 - View OS04G53240 autophagy%2Drelated protein, putative, expressed 4 - View OS08G09240 autophagy%2Drelated protein, putative, expressed 8 + View
Populus trichocarpa
Gene id
Description
Chromosome
Strand
Multiplicon
PT00G13720 PACid=17302117;name=POPTR_0021s00620;alias=pt002202m,estExt_fgenesh4_pg.C_LG_XI0039; scaffold_21 - View PT04G01180 PACid=17312129;name=POPTR_0004s01370;alias=pt007560m,gw1.IV.1606.1; scaffold_4 - View PT14G15020 PACid=17335835;name=POPTR_0014s15210;alias=pt036491m; scaffold_14 + View
Sorghum bicolor
Gene id
Description
Chromosome
Strand
Multiplicon
SB02G034500 2 chr_2 - View
Theobroma cacao
Gene id
Description
Chromosome
Strand
Multiplicon
TC06G019240 Tc06 + View
Vitis vinifera
Gene id
Description
Chromosome
Strand
Multiplicon
VV19G10630 name=GSVIVG01037666001; chr19 + View VV12G10790 name=GSVIVG01030430001; chr12 + View VV10G00990 name=GSVIVG01012719001; chr10 - View
Arabidopsis lyrata
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AL6G36470 | scaffold_6 | - | View | |
| AL2G03420 | scaffold_2 | - | View | |
| AL7G20400 | scaffold_7 | - | View |
Arabidopsis thaliana
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT4G21980 | Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced carbon starvation. Predominantly cytoplasmic with or without N starvation. Upon concanamycin A the protein accumulates in the central vacuole as punctuate structures that resemble autophagic bodies. This localization is more abundant upon N starvation.;Ubiquitin-like superfamily protein | 4 | + | View |
| AT4G04620 | autophagy 8b (ATG8B); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G21980.2); Has 1515 Blast hits to 1513 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 720; Fungi - 178; Plants - 303; Viruses - 3; Other Eukaryotes - 311 (source: NCBI BLink).;Ubiquitin-like superfamily protein | 4 | - | View |
| AT1G62040 | autophagy 8c (ATG8C); FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G21980.2).;Ubiquitin-like superfamily protein | 1 | + | View |
Brachypodium distachyon
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BD1G26400 | beta-tubulin binding, microtubule binding (Blast2GO) | Bd1 | + | View |
| BD3G14980 | beta-tubulin binding, microtubule binding (Blast2GO) | Bd3 | - | View |
Carica papaya
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CP00012G02960 | supercontig_12 | - | View | |
| CP00152G00200 | supercontig_152 | + | View | |
| CP00087G00730 | supercontig_87 | + | View |
Fragaria vesca
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| FV3G25370 | Autophagy-related protein 8C, Precursor (putative) | LG3 | + | View |
| FV3G01100 | Autophagy-related protein 8C, Precursor (putative) | LG3 | + | View |
Glycine max
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GM17G01650 | 17 | Gm17 | - | View |
| GM06G46270 | 06 | Gm06 | + | View |
| GM15G11510 | 15 | Gm15 | + | View |
| GM07G39090 | 07 | Gm07 | + | View |
| GM12G10510 | 12 | Gm12 | - | View |
| GM09G00630 | 09 | Gm09 | + | View |
Malus domestica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MD05G001430 | 5 | - | View | |
| MD03G017160 | 3 | - | View | |
| MD11G018190 | 11 | - | View | |
| MD11G018200 | 11 | - | View |
Manihot esculenta
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ME02717G00020 | scaffold02717 | + | View | |
| ME03241G00250 | scaffold03241 | - | View | |
| ME03241G00260 | scaffold03241 | - | View | |
| ME06598G00170 | scaffold06598 | + | View |
Medicago truncatula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MT2G088230 | Autophagy-related protein 8B (AHRD V1 ***- Q7XPR1); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) | 2 | - | View |
Oryza sativa ssp. japonica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| OS07G32800 | autophagy%2Drelated protein, putative, expressed | 7 | - | View |
| OS04G53240 | autophagy%2Drelated protein, putative, expressed | 4 | - | View |
| OS08G09240 | autophagy%2Drelated protein, putative, expressed | 8 | + | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT00G13720 | PACid=17302117;name=POPTR_0021s00620;alias=pt002202m,estExt_fgenesh4_pg.C_LG_XI0039; | scaffold_21 | - | View |
| PT04G01180 | PACid=17312129;name=POPTR_0004s01370;alias=pt007560m,gw1.IV.1606.1; | scaffold_4 | - | View |
| PT14G15020 | PACid=17335835;name=POPTR_0014s15210;alias=pt036491m; | scaffold_14 | + | View |
Sorghum bicolor
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SB02G034500 | 2 | chr_2 | - | View |
Theobroma cacao
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TC06G019240 | Tc06 | + | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV19G10630 | name=GSVIVG01037666001; | chr19 | + | View |
| VV12G10790 | name=GSVIVG01030430001; | chr12 | + | View |
| VV10G00990 | name=GSVIVG01012719001; | chr10 | - | View |