PLAZA v2.5 : colinear gene pairs

Anchorpoints

Gene id: PT15G00790
Organism: Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
PT03G13680	PACid=17329040;name=POPTR_0003s14630;alias=pt022995m;	scaffold_3	-	View
PT12G02970	PACid=17337098;name=POPTR_0012s03160;alias=pt015696m;	scaffold_12	+	View
PT01G11130	PACid=17305111;name=POPTR_0001s11320;alias=pt038021m;	scaffold_1	-	View

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL6G24450		scaffold_6	-	View
AL5G18480		scaffold_5	-	View
AL8G18240		scaffold_8	-	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT5G53570	Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT3G49350.1); Has 4559 Blast hits to 4121 proteins in 234 species: Archae - 0; Bacteria - 21; Metazoa - 2510; Fungi - 811; Plants - 657; Viruses - 1; Other Eukaryotes - 559 (source: NCBI BLink).;Ypt/Rab-GAP domain of gyp1p superfamily protein	5	-	View
AT5G24390	Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT3G49350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Ypt/Rab-GAP domain of gyp1p superfamily protein	5	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00003G01350		supercontig_3	-	View
CP00003G01360		supercontig_3	-	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV7G35310	GTPase-activating protein GYP7 (probable)	LG7	+	View
FV0G41950	GTPase-activating protein GYP7 (probable)	scf0512956	+	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM06G13850	06	Gm06	-	View
GM04G41000	04	Gm04	+	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD07G020470		7	-	View
MD01G022390		1	-	View
MD13G011330		13	+	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME07330G00060		scaffold07330	+	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT3G092100	GTPase activator-like protein of Rab-like small GTPases (AHRD V1 ***- Q9FIN3_ARATH); contains Interpro domain(s) IPR000195 RabGAP/TBC	3	-	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_10G27830	source=BGI China;type=FgeneSH;	Chr10	+	View

Ricinus communis

Gene id	Description	Chromosome	Strand	Multiplicon
RC30068G00610		30068	-	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC03G021470		Tc03	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV02G05590	name=GSVIVG01019648001;	chr2	-	View
VV16G09540	name=GSVIVG01038614001;	chr16	+	View