Anchorpoints
- Gene id
- PT11G06790
- Organism
- Populus trichocarpa
Paralogs (intra-species colinear regions)
Gene id
Description
Chromosome
Strand
Multiplicon
PT04G05750 PACid=17345718;name=POPTR_0004s05940;alias=pt007401m; scaffold_4 + View
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id
Description
Chromosome
Strand
Multiplicon
AL7G23880 scaffold_7 + View AL4G01750 scaffold_4 + View AL8G02700 scaffold_8 - View
Arabidopsis thaliana
Gene id
Description
Chromosome
Strand
Multiplicon
AT2G22290 RAB GTPase homolog H1D (RABH1d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: mitochondrion; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab6-related (InterPro:IPR015600); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog H1E (TAIR:AT5G10260.1); Has 26960 Blast hits to 26930 proteins in 721 species: Archae - 17; Bacteria - 142; Metazoa - 14130; Fungi - 3768; Plants - 3162; Viruses - 20; Other Eukaryotes - 5721 (source: NCBI BLink).;RAB GTPase homolog H1D 2 + View AT5G45750 RAB GTPase homolog A1C (RABA1c); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, nucleus, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1D (TAIR:AT4G18800.1); Has 28355 Blast hits to 28298 proteins in 771 species: Archae - 32; Bacteria - 162; Metazoa - 14720; Fungi - 4238; Plants - 3283; Viruses - 20; Other Eukaryotes - 5900 (source: NCBI BLink).;RAB GTPase homolog A1C 5 + View AT5G45970 Encodes a Rac-like protein ARAC2. A member of ROP GTPase gene family.;RAC-like 2 5 + View AT5G46025 Ras-related small GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1E (TAIR:AT4G18430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Ras-related small GTP-binding family protein 5 - View AT4G18800 RAB GTPase homolog A1D (RABA1d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1C (TAIR:AT5G45750.1); Has 27980 Blast hits to 27923 proteins in 754 species: Archae - 26; Bacteria - 162; Metazoa - 14618; Fungi - 4214; Plants - 3069; Viruses - 20; Other Eukaryotes - 5871 (source: NCBI BLink).;RAB GTPase homolog A1D 4 - View
Brachypodium distachyon
Gene id
Description
Chromosome
Strand
Multiplicon
BD2G49900 GTPase activity (Blast2GO) Bd2 + View
Carica papaya
Gene id
Description
Chromosome
Strand
Multiplicon
CP00052G01440 supercontig_52 - View CP00075G00600 supercontig_75 + View
Fragaria vesca
Gene id
Description
Chromosome
Strand
Multiplicon
FV6G23500 Ras-related protein Rab11D LG6 - View FV3G14480 Ras-related protein RABA1c (putative) LG3 - View
Glycine max
Gene id
Description
Chromosome
Strand
Multiplicon
GM20G31150 20 Gm20 - View GM13G36530 13 Gm13 + View GM12G34000 12 Gm12 - View
Malus domestica
Gene id
Description
Chromosome
Strand
Multiplicon
MD09G022890 9 + View MD10G022150 10 + View MD05G005850 5 - View
Manihot esculenta
Gene id
Description
Chromosome
Strand
Multiplicon
ME04003G00040 scaffold04003 - View
Oryza sativa ssp. japonica
Gene id
Description
Chromosome
Strand
Multiplicon
OS06G35814 ras%2Drelated protein, putative, expressed 6 - View OS01G54590 ras%2Drelated protein, putative, expressed 1 + View
Oryza sativa ssp. indica
Gene id
Description
Chromosome
Strand
Multiplicon
OSINDICA_06G31500 source=BGI China;type=FgeneSH; Chr06 - View OSINDICA_01G51530 source=BGI China;type=FgeneSH; Chr01 + View
Ricinus communis
Gene id
Description
Chromosome
Strand
Multiplicon
RC30026G00260 30026 - View
Sorghum bicolor
Gene id
Description
Chromosome
Strand
Multiplicon
SB06G019620 6 chr_6 + View SB10G021730 10 chr_10 - View
Selaginella moellendorffii
Gene id
Description
Chromosome
Strand
Multiplicon
SM00002G02260 scaffold_2 + View
Theobroma cacao
Gene id
Description
Chromosome
Strand
Multiplicon
TC01G008920 Tc01 - View TC06G013980 Tc06 + View
Vitis vinifera
Gene id
Description
Chromosome
Strand
Multiplicon
VV10G02470 name=GSVIVG01021253001; chr10 - View VV19G01690 name=GSVIVG01014181001; chr19 + View
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT04G05750 | PACid=17345718;name=POPTR_0004s05940;alias=pt007401m; | scaffold_4 | + | View |
Arabidopsis lyrata
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AL7G23880 | scaffold_7 | + | View | |
| AL4G01750 | scaffold_4 | + | View | |
| AL8G02700 | scaffold_8 | - | View |
Arabidopsis thaliana
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT2G22290 | RAB GTPase homolog H1D (RABH1d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: mitochondrion; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab6-related (InterPro:IPR015600); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog H1E (TAIR:AT5G10260.1); Has 26960 Blast hits to 26930 proteins in 721 species: Archae - 17; Bacteria - 142; Metazoa - 14130; Fungi - 3768; Plants - 3162; Viruses - 20; Other Eukaryotes - 5721 (source: NCBI BLink).;RAB GTPase homolog H1D | 2 | + | View |
| AT5G45750 | RAB GTPase homolog A1C (RABA1c); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, nucleus, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1D (TAIR:AT4G18800.1); Has 28355 Blast hits to 28298 proteins in 771 species: Archae - 32; Bacteria - 162; Metazoa - 14720; Fungi - 4238; Plants - 3283; Viruses - 20; Other Eukaryotes - 5900 (source: NCBI BLink).;RAB GTPase homolog A1C | 5 | + | View |
| AT5G45970 | Encodes a Rac-like protein ARAC2. A member of ROP GTPase gene family.;RAC-like 2 | 5 | + | View |
| AT5G46025 | Ras-related small GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1E (TAIR:AT4G18430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Ras-related small GTP-binding family protein | 5 | - | View |
| AT4G18800 | RAB GTPase homolog A1D (RABA1d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1C (TAIR:AT5G45750.1); Has 27980 Blast hits to 27923 proteins in 754 species: Archae - 26; Bacteria - 162; Metazoa - 14618; Fungi - 4214; Plants - 3069; Viruses - 20; Other Eukaryotes - 5871 (source: NCBI BLink).;RAB GTPase homolog A1D | 4 | - | View |
Brachypodium distachyon
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BD2G49900 | GTPase activity (Blast2GO) | Bd2 | + | View |
Carica papaya
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CP00052G01440 | supercontig_52 | - | View | |
| CP00075G00600 | supercontig_75 | + | View |
Fragaria vesca
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| FV6G23500 | Ras-related protein Rab11D | LG6 | - | View |
| FV3G14480 | Ras-related protein RABA1c (putative) | LG3 | - | View |
Glycine max
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GM20G31150 | 20 | Gm20 | - | View |
| GM13G36530 | 13 | Gm13 | + | View |
| GM12G34000 | 12 | Gm12 | - | View |
Malus domestica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MD09G022890 | 9 | + | View | |
| MD10G022150 | 10 | + | View | |
| MD05G005850 | 5 | - | View |
Manihot esculenta
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ME04003G00040 | scaffold04003 | - | View |
Oryza sativa ssp. japonica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| OS06G35814 | ras%2Drelated protein, putative, expressed | 6 | - | View |
| OS01G54590 | ras%2Drelated protein, putative, expressed | 1 | + | View |
Oryza sativa ssp. indica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| OSINDICA_06G31500 | source=BGI China;type=FgeneSH; | Chr06 | - | View |
| OSINDICA_01G51530 | source=BGI China;type=FgeneSH; | Chr01 | + | View |
Ricinus communis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| RC30026G00260 | 30026 | - | View |
Sorghum bicolor
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SB06G019620 | 6 | chr_6 | + | View |
| SB10G021730 | 10 | chr_10 | - | View |
Selaginella moellendorffii
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SM00002G02260 | scaffold_2 | + | View |
Theobroma cacao
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TC01G008920 | Tc01 | - | View | |
| TC06G013980 | Tc06 | + | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV10G02470 | name=GSVIVG01021253001; | chr10 | - | View |
| VV19G01690 | name=GSVIVG01014181001; | chr19 | + | View |