PLAZA v2.5 : colinear gene pairs

Anchorpoints

Gene id: PT02G17430
Organism: Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
PT14G09580	PACid=17338654;name=POPTR_0014s09770;alias=pt036083m,gw1.XIV.1826.1;	scaffold_14	+	View

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL1G01150		scaffold_1	+	View
AL7G24270		scaffold_7	+	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT4G18430	RAB GTPase homolog A1E (RABA1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1F (TAIR:AT5G60860.1); Has 27831 Blast hits to 27775 proteins in 750 species: Archae - 32; Bacteria - 149; Metazoa - 14651; Fungi - 4104; Plants - 3007; Viruses - 20; Other Eukaryotes - 5868 (source: NCBI BLink).;RAB GTPase homolog A1E	4	-	View
AT1G01200	RAB GTPase homolog A3 (RABA3); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, nucleus, cell plate; EXPRESSED IN: lateral root cap, hypocotyl, root, flower, epidermis; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A4C (TAIR:AT5G47960.1); Has 27164 Blast hits to 27137 proteins in 734 species: Archae - 19; Bacteria - 134; Metazoa - 14292; Fungi - 3779; Plants - 3194; Viruses - 20; Other Eukaryotes - 5726 (source: NCBI BLink).;RAB GTPase homolog A3	1	-	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV7G04830	Ras-related protein Rab11D (similar to)	LG7	-	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM16G02460	16	Gm16	-	View
GM03G42030	03	Gm03	+	View
GM07G05860	07	Gm07	-	View
GM19G44730	19	Gm19	+	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD05G004950		5	-	View
MD07G013490		7	+	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME03581G00430		scaffold03581	-	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT8G027220	Ras-related protein Rab-11A (AHRD V1 ***- Q5ZJN2); contains Interpro domain(s) IPR015595 Rab11-related	8	+	View
MT7G117910	Ras-related GTP-binding protein (Fragment) (AHRD V1 -* Q0WNE9_ARATH); contains Interpro domain(s) IPR015595 Rab11-related	7	+	View

Ricinus communis

Gene id	Description	Chromosome	Strand	Multiplicon
RC28014G00010		28014	+	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC01G034070		Tc01	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV15G07110	name=GSVIVG01027396001;	chr15	-	View