Anchorpoints

Gene id
OS02G43690
Organism
Oryza sativa ssp. japonica

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL8G00720scaffold_8-View
AL7G25440scaffold_7+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT4G17530RAB GTPase homolog 1C (RAB1C); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 1A (TAIR:AT5G47200.1); Has 29496 Blast hits to 29428 proteins in 784 species: Archae - 23; Bacteria - 169; Metazoa - 15486; Fungi - 4134; Plants - 3462; Viruses - 20; Other Eukaryotes - 6202 (source: NCBI BLink).;RAB GTPase homolog 1C4-View
AT5G47200RAB GTPase homolog 1A (RAB1A); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 1C (TAIR:AT4G17530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;RAB GTPase homolog 1A5+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV1G06240GTP-binding nuclear protein Ran-3 (similar to)LG1-View
FV2G10770Ras-related protein RAB1BV (putative)LG2-View
FV7G32180GTP-binding protein YPTM2 (similar to)LG7+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM03G2609003Gm03+View
GM05G0526005Gm05-View
GM17G1555017Gm17-View
GM09G3786009Gm09-View
GM18G4861018Gm18+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME06701G00160scaffold06701+View
ME01127G00140scaffold01127+View
ME11581G01030scaffold11581-View
ME11341G00460scaffold11341-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_02G42130source=BGI China;type=FgeneSH;Chr02+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT03G07020PACid=17335136;name=POPTR_0003s07970;alias=pt024066m,Pt-RAB1.6,estExt_fgenesh4_pm.C_LG_III0194;scaffold_3-View
PT15G11520PACid=17330719;name=POPTR_0015s12470;alias=pt001090m,grail3.0005041702,Pt-ARA7.2;scaffold_15+View
PT01G15090PACid=17321081;name=POPTR_0001s15280;alias=pt040225m,grail3.0029008201,Pt-RAB1.5;scaffold_1+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30147G0243030147-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB04G0331604chr_4-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC03G016500Tc03+View
TC03G024450Tc03+View
TC01G039340Tc01-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV16G01660name=GSVIVG01013868001;chr16+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM04G20270LOC100217200 (TIDP3363), mRNA4+View
ZM05G35320Putative uncharacterized protein 5+View


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Gene id
Species
Description
Chromosome
Strand