PLAZA v2.5 : colinear gene pairs

Anchorpoints

Gene id: ME02973G00060
Organism: Manihot esculenta

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
ME05859G00660		scaffold05859	-	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT2G27550	encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations.;centroradialis	2	+	View

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD5G09270	Homologous to Arabidopsis CENTRORADIALIS	Bd5	-	View
BD3G44860	Homologous to Arabidopsis CENTRORADIALIS	Bd3	-	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV2G44170	CEN-like protein 2 (putative)	LG2	+	View
FV6G18400	Protein TERMINAL FLOWER 1 (putative)	LG6	+	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM13G39360	13	Gm13	+	View
GM03G35250	03	Gm03	-	View
GM12G30940	12	Gm12	-	View
GM19G37890	19	Gm19	-	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD10G024870		10	-	View
MD13G021620		13	-	View
MD12G002070		12	-	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT2G086270	Terminal flower 1 (Fragment) (AHRD V1 **-- B3VT07_9ROSA); contains Interpro domain(s) IPR008914 Phosphatidylethanolamine-binding protein PEBP	2	-	View
MT7G104460	TFL1 (Fragment) (AHRD V1 **-- A9LDB9_VICFA); contains Interpro domain(s) IPR008914 Phosphatidylethanolamine-binding protein PEBP	7	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS12G05590	RCN3 Centroradialis%2Dlike1 homogous to TFL1 gene%3B contains Pfam profile PF01161%3A Phosphatidylethanolamine%2Dbinding protein, expressed	12	-	View
OS02G32950	RCN2 Centroradialis%2Dlike1 homologous to TFL1 gene%3B contains Pfam profile PF01161%3A Phosphatidylethanolamine%2Dbinding protein, expressed	2	-	View
OS04G33570	RCN4 Centroradialis%2Dlike1 homologous to TFL1 gene%3B contains Pfam profile PF01161%3A Phosphatidylethanolamine%2Dbinding protein, expressed	4	-	View
OS11G05470	RCN1 Centroradialis%2Dlike1 homogous to TFL1 gene%3B contains Pfam profile PF01161%3A Phosphatidylethanolamine%2Dbinding protein, expressed	11	-	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_12G04390	source=BGI China;type=FgeneSH;	Chr12	-	View
OSINDICA_02G31510	source=BGI China;type=FgeneSH;	Chr02	-	View
OSINDICA_04G25690	source=BGI China;type=FgeneSH;	Chr04	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT09G16480	PACid=17321145;name=POPTR_0009s16670;alias=pt005242m,grail3.0001004901,Pt-TFL1.1;	scaffold_9	-	View
PT04G20270	PACid=17338741;name=POPTR_0004s21410;alias=pt007321m,Pt-TFL1.2,estExt_fgenesh4_pg.C_660171;	scaffold_4	-	View

Ricinus communis

Gene id	Description	Chromosome	Strand	Multiplicon
RC30055G00140		30055	-	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB04G021650	4	chr_4	-	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC09G027970		Tc09	+	View
TC05G008760		Tc05	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV06G10240	name=GSVIVG01036145001;	chr6	-	View
VV08G11870	name=GSVIVG01033829001;	chr8	+	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM02G16140	ZCN4 protein	2	+	View