PLAZA v2.5 : colinear gene pairs

Anchorpoints

Gene id: GM15G17500
Organism: Glycine max

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
GM09G06230	09	Gm09	-	View
GM09G06600	09	Gm09	-	View

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL3G40840		scaffold_3	+	View
AL4G20430		scaffold_4	-	View
AL7G22660		scaffold_7	+	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT4G19890	Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1).;Pentatricopeptide repeat (PPR-like) superfamily protein	4	-	View
AT4G20090	embryo defective 1025 (EMB1025); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G64320.1); Has 50788 Blast hits to 13881 proteins in 299 species: Archae - 2; Bacteria - 48; Metazoa - 729; Fungi - 797; Plants - 47488; Viruses - 0; Other Eukaryotes - 1724 (source: NCBI BLink).;Pentatricopeptide repeat (PPR) superfamily protein	4	-	View
AT2G18940	Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1); Has 70772 Blast hits to 15680 proteins in 317 species: Archae - 4; Bacteria - 89; Metazoa - 1190; Fungi - 1125; Plants - 65689; Viruses - 0; Other Eukaryotes - 2675 (source: NCBI BLink).;Tetratricopeptide repeat (TPR)-like superfamily protein	2	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00081G01460		supercontig_81	-	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV3G05810	Pentatricopeptide repeat-containing protein At3g53700, chloroplastic, Precursor (probable)	LG3	-	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD13G029310		13	-	View
MD10G019500		10	-	View
MD03G006810		3	-	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT2G036560	Pentatricopeptide repeat-containing protein At2g18940 (AHRD V1 ***- O64624); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat	2	-	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_01G34020	source=BGI China;type=FgeneSH;	Chr01	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT08G09980	PACid=17310339;name=POPTR_0008s10170;alias=pt028607m;	scaffold_8	-	View
PT06G16660	PACid=17331553;name=POPTR_0006s17990;alias=pt017096m,fgenesh4_pm.C_scaffold_121000016;	scaffold_6	+	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB10G028400	10	chr_10	-	View
SB10G028420	10	chr_10	-	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC09G017950		Tc09	+	View
TC05G026230		Tc05	+	View
TC05G026240		Tc05	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV11G10570	name=GSVIVG01032336001;	chr11	+	View