PLAZA v2.5 : colinear gene pairs

Anchorpoints

Gene id: GM06G19020
Organism: Glycine max

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
GM05G02460	05	Gm05	+	View
GM02G04240	02	Gm02	+	View
GM18G20700	18	Gm18	+	View
GM01G03390	01	Gm01	-	View
GM17G09450	17	Gm17	-	View
GM08G39100	08	Gm08	-	View

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL2G19090		scaffold_2	+	View
AL1G25180		scaffold_1	-	View

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT3G48230	Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT5G18460.1); Has 744 Blast hits to 694 proteins in 28 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 10; Plants - 719; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of Unknown Function (DUF239)	3	+	View
AT1G70550	Protein of Unknown Function (DUF239); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2); Has 775 Blast hits to 727 proteins in 29 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 10; Plants - 752; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of Unknown Function (DUF239)	1	+	View
AT1G23340	Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G70550.1); Has 778 Blast hits to 728 proteins in 29 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 10; Plants - 755; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of Unknown Function (DUF239)	1	-	View

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD2G04360		Bd2	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00153G00120		supercontig_153	+	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV5G06660	Isocitrate dehydrogenase [NADP] (IDH) (probable)	LG5	+	View

Lotus japonicus

Gene id	Description	Chromosome	Strand	Multiplicon
LJ2G018600		chr2	+	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD06G013930		6	-	View
MD14G017490		14	-	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME12211G00040		scaffold12211	+	View
ME04175G00030		scaffold04175	+	View
ME12794G00770		scaffold12794	-	View
ME03410G00210		scaffold03410	+	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT3G077430	Carboxyl-terminal proteinase (AHRD V1 ***- B4FXN3_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant	3	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS01G07570	carboxyl%2Dterminal proteinase, putative, expressed	1	-	View
OS06G28000	carboxyl%2Dterminal peptidase, putative, expressed	6	-	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_06G24340	source=BGI China;type=FgeneSH;	Chr06	-	View
OSINDICA_01G07040	source=BGI China;type=FgeneSH;	Chr01	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT10G04290	PACid=17308127;name=POPTR_0010s05430;alias=pt011775m,fgenesh4_pg.C_LG_X000603;	scaffold_10	+	View
PT12G08450	PACid=17313759;name=POPTR_0012s09020;alias=pt015877m,eugene3.00120809;	scaffold_12	-	View
PT15G08240	PACid=17321141;name=POPTR_0015s09190;alias=pt000537m;	scaffold_15	+	View
PT08G19030	PACid=17323745;name=POPTR_0008s19220;alias=pt026983m;	scaffold_8	-	View

Ricinus communis

Gene id	Description	Chromosome	Strand	Multiplicon
RC30147G05810		30147	-	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC02G024390		Tc02	+	View
TC03G001730		Tc03	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV17G01330	name=GSVIVG01007693001;	chr17	+	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM03G03730	LOC100281702	3	+	View