Anchorpoints

Gene id
CPCG00050
Organism
Carica papaya

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL2G10380scaffold_2+View
AL2G10390scaffold_2+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
ATCG00020Encodes chlorophyll binding protein D1, a part of the photosystem II reaction center core;photosystem II reaction center protein Achloroplast-View
ATCG00040Encodes a maturase located in the trnK intron in the chloroplast genome.;maturase Kchloroplast-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BDCG00020psbA;PSII 32kDa protein;protein_id=ACF08621.1;chloroplast-View
BDCG00040matK;maturase;protein_id=ACF08622.1;chloroplast-View

Chlamydomonas reinhardtii

Gene id Description Chromosome Strand Multiplicon
CRCG00830psbA;photosystem II reaction center protein D1;protein_id=DAA00957.1;chloroplast+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJCG00020psbA;PSII 32 KDa protein;protein_id=BAB33176.1;chloroplast-View
LJCG00040matK;maturase for trnK intron;protein_id=BAB33177.1;chloroplast-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
MECG00030psbA;photosystem II protein D1;protein_id=ABV66134.1;chloroplast-View
MECG00050matK;maturase K;protein_id=ABV66135.1;chloroplast-View
ME04355G00230scaffold04355+View
ME04355G00240scaffold04355+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT4G051280Maturase K (AHRD V1 ***- Q5YJV7_MEDTR); contains Interpro domain(s) IPR002866 Maturase, MatK, N-terminal4+View
MT4G051290Photosystem Q(B) protein (AHRD V1 ***- B7FIW8_MEDTR); contains Interpro domain(s) IPR005867 Photosystem II reaction centre protein PsbA/D14+View
MT4G050770Photosystem Q(B) protein (AHRD V1 ***- B8R466_TRISU); contains Interpro domain(s) IPR000484 Photosynthetic reaction centre, L/M4-View
MT4G050780Maturase K (AHRD V1 ***- Q8MCR0_9FABA); contains Interpro domain(s) IPR002866 Maturase, MatK, N-terminal4+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OSCG00010psbA;PSII 32kDa protein;protein_id=CAA34007.1;chloroplast-View
OSCG00030protein_id=CAA34008.1;chloroplast-View
OS10G21192photosystem Q, putative10-View
OS10G21194maturase K, putative10-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_CG00010psbA;photosystem II protein D1;protein_id=AAS46102.1;chloroplast-View
OSINDICA_CG00020maturase;protein_id=AAS46103.1;chloroplast-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PTCG00030psbA;photosystem II D1-reaction-center protein;protein_id=ABO36683.1;chloroplast-View
PTCG00050matK;maturase K;protein_id=ABO36684.1;chloroplast-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SBCG00040psbA;photosystem II protein D1;protein_id=ABK79476.1;chloroplast-View
SBCG00060matK;maturase K;protein_id=ABK79477.1;chloroplast-View

Selaginella moellendorffii

Gene id Description Chromosome Strand Multiplicon
SM00175G00330scaffold_175+View
SM00175G00340scaffold_175+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TCCG00030psbA;photosystem II protein D1;protein_id=ADO64870.1;chloroplast-View
TCCG00050matK;maturase K;protein_id=ADO64871.1;chloroplast-View
TC04G003660Tc04+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VVCG00020psbA;photosystem II protein D1;protein_id=ABE47514.1;chloroplast-View
VVCG00040matK;maturase K;protein_id=ABE47515.1;chloroplast-View


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Gene id
Species
Description
Chromosome
Strand