PLAZA v2.5 : colinear gene pairs

Anchorpoints

Gene id: ATCG00020
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL2G10380		scaffold_2	+	View
AL2G10390		scaffold_2	+	View

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BDCG00020	psbA;PSII 32kDa protein;protein_id=ACF08621.1;	chloroplast	-	View
BDCG00040	matK;maturase;protein_id=ACF08622.1;	chloroplast	-	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CPCG00030	psbA;photosystem II protein D1;protein_id=ABY86762.1;	chloroplast	-	View
CPCG00050	matK;maturase;protein_id=ABY86763.1;	chloroplast	-	View

Chlamydomonas reinhardtii

Gene id	Description	Chromosome	Strand	Multiplicon
CRCG00830	psbA;photosystem II reaction center protein D1;protein_id=DAA00957.1;	chloroplast	+	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GMCG00030	psbA;photosystem II protein D1;protein_id=ABC25105.1;	chloroplast	-	View
GMCG00050	matK;maturase K;protein_id=ABC25106.1;	chloroplast	-	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
MECG00030	psbA;photosystem II protein D1;protein_id=ABV66134.1;	chloroplast	-	View
MECG00050	matK;maturase K;protein_id=ABV66135.1;	chloroplast	-	View
ME04355G00230		scaffold04355	+	View
ME04355G00240		scaffold04355	+	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT4G051280	Maturase K (AHRD V1 ***- Q5YJV7_MEDTR); contains Interpro domain(s) IPR002866 Maturase, MatK, N-terminal	4	+	View
MT4G051290	Photosystem Q(B) protein (AHRD V1 ***- B7FIW8_MEDTR); contains Interpro domain(s) IPR005867 Photosystem II reaction centre protein PsbA/D1	4	+	View
MT4G050770	Photosystem Q(B) protein (AHRD V1 ***- B8R466_TRISU); contains Interpro domain(s) IPR000484 Photosynthetic reaction centre, L/M	4	-	View
MT4G050780	Maturase K (AHRD V1 ***- Q8MCR0_9FABA); contains Interpro domain(s) IPR002866 Maturase, MatK, N-terminal	4	+	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OSCG00010	psbA;PSII 32kDa protein;protein_id=CAA34007.1;	chloroplast	-	View
OSCG00030	protein_id=CAA34008.1;	chloroplast	-	View
OS10G21192	photosystem Q, putative	10	-	View
OS10G21194	maturase K, putative	10	-	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_CG00010	psbA;photosystem II protein D1;protein_id=AAS46102.1;	chloroplast	-	View
OSINDICA_CG00020	maturase;protein_id=AAS46103.1;	chloroplast	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PTCG00030	psbA;photosystem II D1-reaction-center protein;protein_id=ABO36683.1;	chloroplast	-	View
PTCG00050	matK;maturase K;protein_id=ABO36684.1;	chloroplast	-	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SBCG00040	psbA;photosystem II protein D1;protein_id=ABK79476.1;	chloroplast	-	View
SBCG00060	matK;maturase K;protein_id=ABK79477.1;	chloroplast	-	View

Selaginella moellendorffii

Gene id	Description	Chromosome	Strand	Multiplicon
SM00175G00330		scaffold_175	+	View
SM00175G00340		scaffold_175	+	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TCCG00030	psbA;photosystem II protein D1;protein_id=ADO64870.1;	chloroplast	-	View
TCCG00050	matK;maturase K;protein_id=ADO64871.1;	chloroplast	-	View
TC04G003660		Tc04	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VVCG00020	psbA;photosystem II protein D1;protein_id=ABE47514.1;	chloroplast	-	View
VVCG00040	matK;maturase K;protein_id=ABE47515.1;	chloroplast	-	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZMCG00010	Maturase K (Intron maturase)	chloroplast	-	View