Anchorpoints
- Gene id
- AT5G03530
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
Gene id
Description
Chromosome
Strand
Multiplicon
AT4G18430 RAB GTPase homolog A1E (RABA1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1F (TAIR:AT5G60860.1); Has 27831 Blast hits to 27775 proteins in 750 species: Archae - 32; Bacteria - 149; Metazoa - 14651; Fungi - 4104; Plants - 3007; Viruses - 20; Other Eukaryotes - 5868 (source: NCBI BLink).;RAB GTPase homolog A1E 4 - View AT3G09900 RAB GTPase homolog E1E (RABE1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 8C (TAIR:AT5G03520.1); Has 29798 Blast hits to 29728 proteins in 826 species: Archae - 21; Bacteria - 199; Metazoa - 15588; Fungi - 4257; Plants - 3488; Viruses - 20; Other Eukaryotes - 6225 (source: NCBI BLink).;RAB GTPase homolog E1E 3 + View AT3G09910 RAB GTPase homolog C2B (RABC2b); FUNCTIONS IN: GTP binding, transcription factor binding, ATP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: sepal, root, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras (InterPro:IPR013753), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase (InterPro:IPR020851), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078), Rab18 (InterPro:IPR015598); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog C2A (TAIR:AT5G03530.1); Has 29365 Blast hits to 29334 proteins in 746 species: Archae - 15; Bacteria - 117; Metazoa - 15214; Fungi - 4279; Plants - 3567; Viruses - 20; Other Eukaryotes - 6153 (source: NCBI BLink).;RAB GTPase homolog C2B 3 - View
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id
Description
Chromosome
Strand
Multiplicon
AL6G02740 scaffold_6 + View AL6G02750 scaffold_6 - View AL8G02380 scaffold_8 - View AL7G24270 scaffold_7 + View AL8G27030 scaffold_8 + View
Fragaria vesca
Gene id
Description
Chromosome
Strand
Multiplicon
FV6G50030 GTP-binding protein yptV3 (similar to) LG6 - View
Glycine max
Gene id
Description
Chromosome
Strand
Multiplicon
GM03G34330 03 Gm03 - View GM19G37020 19 Gm19 - View GM10G08020 10 Gm10 - View
Lotus japonicus
Gene id
Description
Chromosome
Strand
Multiplicon
LJ1G050070 chr1 - View
Malus domestica
Gene id
Description
Chromosome
Strand
Multiplicon
MD05G004950 5 - View
Manihot esculenta
Gene id
Description
Chromosome
Strand
Multiplicon
ME11069G00550 scaffold11069 - View ME11069G00560 scaffold11069 - View
Medicago truncatula
Gene id
Description
Chromosome
Strand
Multiplicon
MT2G014990 GTP-binding protein ras-like (AHRD V1 **-* Q9FJH0_ARATH); contains Interpro domain(s) IPR015595 Rab11-related 2 - View
Populus trichocarpa
Gene id
Description
Chromosome
Strand
Multiplicon
PT08G03000 PACid=17309479;name=POPTR_0008s03190;alias=pt027812m,estExt_Genewise1_v1.C_LG_VIII1467,Pt-RAB1.9; scaffold_8 + View PT06G12130 PACid=17310687;name=POPTR_0006s12320;alias=pt019399m; scaffold_6 + View
Ricinus communis
Gene id
Description
Chromosome
Strand
Multiplicon
RC29646G00610 29646 + View RC29646G00630 29646 + View RC30078G00410 30078 + View RC30078G00420 30078 + View
Theobroma cacao
Gene id
Description
Chromosome
Strand
Multiplicon
TC06G015030 Tc06 + View TC06G015050 Tc06 + View TC00G055990 Tc00 - View
Vitis vinifera
Gene id
Description
Chromosome
Strand
Multiplicon
VV13G02380 name=GSVIVG01016169001; chr13 - View VV13G02460 name=GSVIVG01016180001; chr13 - View VV10G01640 name=GSVIVG01021143001; chr10 - View VV10G01660 name=GSVIVG01021145001; chr10 - View
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT4G18430 | RAB GTPase homolog A1E (RABA1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1F (TAIR:AT5G60860.1); Has 27831 Blast hits to 27775 proteins in 750 species: Archae - 32; Bacteria - 149; Metazoa - 14651; Fungi - 4104; Plants - 3007; Viruses - 20; Other Eukaryotes - 5868 (source: NCBI BLink).;RAB GTPase homolog A1E | 4 | - | View |
| AT3G09900 | RAB GTPase homolog E1E (RABE1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 8C (TAIR:AT5G03520.1); Has 29798 Blast hits to 29728 proteins in 826 species: Archae - 21; Bacteria - 199; Metazoa - 15588; Fungi - 4257; Plants - 3488; Viruses - 20; Other Eukaryotes - 6225 (source: NCBI BLink).;RAB GTPase homolog E1E | 3 | + | View |
| AT3G09910 | RAB GTPase homolog C2B (RABC2b); FUNCTIONS IN: GTP binding, transcription factor binding, ATP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: sepal, root, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras (InterPro:IPR013753), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase (InterPro:IPR020851), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078), Rab18 (InterPro:IPR015598); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog C2A (TAIR:AT5G03530.1); Has 29365 Blast hits to 29334 proteins in 746 species: Archae - 15; Bacteria - 117; Metazoa - 15214; Fungi - 4279; Plants - 3567; Viruses - 20; Other Eukaryotes - 6153 (source: NCBI BLink).;RAB GTPase homolog C2B | 3 | - | View |
Arabidopsis lyrata
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AL6G02740 | scaffold_6 | + | View | |
| AL6G02750 | scaffold_6 | - | View | |
| AL8G02380 | scaffold_8 | - | View | |
| AL7G24270 | scaffold_7 | + | View | |
| AL8G27030 | scaffold_8 | + | View |
Fragaria vesca
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| FV6G50030 | GTP-binding protein yptV3 (similar to) | LG6 | - | View |
Glycine max
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GM03G34330 | 03 | Gm03 | - | View |
| GM19G37020 | 19 | Gm19 | - | View |
| GM10G08020 | 10 | Gm10 | - | View |
Lotus japonicus
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| LJ1G050070 | chr1 | - | View |
Malus domestica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MD05G004950 | 5 | - | View |
Manihot esculenta
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ME11069G00550 | scaffold11069 | - | View | |
| ME11069G00560 | scaffold11069 | - | View |
Medicago truncatula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MT2G014990 | GTP-binding protein ras-like (AHRD V1 **-* Q9FJH0_ARATH); contains Interpro domain(s) IPR015595 Rab11-related | 2 | - | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT08G03000 | PACid=17309479;name=POPTR_0008s03190;alias=pt027812m,estExt_Genewise1_v1.C_LG_VIII1467,Pt-RAB1.9; | scaffold_8 | + | View |
| PT06G12130 | PACid=17310687;name=POPTR_0006s12320;alias=pt019399m; | scaffold_6 | + | View |
Ricinus communis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| RC29646G00610 | 29646 | + | View | |
| RC29646G00630 | 29646 | + | View | |
| RC30078G00410 | 30078 | + | View | |
| RC30078G00420 | 30078 | + | View |
Theobroma cacao
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TC06G015030 | Tc06 | + | View | |
| TC06G015050 | Tc06 | + | View | |
| TC00G055990 | Tc00 | - | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV13G02380 | name=GSVIVG01016169001; | chr13 | - | View |
| VV13G02460 | name=GSVIVG01016180001; | chr13 | - | View |
| VV10G01640 | name=GSVIVG01021143001; | chr10 | - | View |
| VV10G01660 | name=GSVIVG01021145001; | chr10 | - | View |