Anchorpoints

Gene id
AT5G03530
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT4G18430RAB GTPase homolog A1E (RABA1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1F (TAIR:AT5G60860.1); Has 27831 Blast hits to 27775 proteins in 750 species: Archae - 32; Bacteria - 149; Metazoa - 14651; Fungi - 4104; Plants - 3007; Viruses - 20; Other Eukaryotes - 5868 (source: NCBI BLink).;RAB GTPase homolog A1E4-View
AT3G09900RAB GTPase homolog E1E (RABE1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 8C (TAIR:AT5G03520.1); Has 29798 Blast hits to 29728 proteins in 826 species: Archae - 21; Bacteria - 199; Metazoa - 15588; Fungi - 4257; Plants - 3488; Viruses - 20; Other Eukaryotes - 6225 (source: NCBI BLink).;RAB GTPase homolog E1E3+View
AT3G09910RAB GTPase homolog C2B (RABC2b); FUNCTIONS IN: GTP binding, transcription factor binding, ATP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: sepal, root, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras (InterPro:IPR013753), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase (InterPro:IPR020851), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078), Rab18 (InterPro:IPR015598); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog C2A (TAIR:AT5G03530.1); Has 29365 Blast hits to 29334 proteins in 746 species: Archae - 15; Bacteria - 117; Metazoa - 15214; Fungi - 4279; Plants - 3567; Viruses - 20; Other Eukaryotes - 6153 (source: NCBI BLink).;RAB GTPase homolog C2B3-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL6G02740scaffold_6+View
AL6G02750scaffold_6-View
AL8G02380scaffold_8-View
AL7G24270scaffold_7+View
AL8G27030scaffold_8+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV6G50030GTP-binding protein yptV3 (similar to)LG6-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM03G3433003Gm03-View
GM19G3702019Gm19-View
GM10G0802010Gm10-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ1G050070chr1-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD05G0049505-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME11069G00550scaffold11069-View
ME11069G00560scaffold11069-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT2G014990GTP-binding protein ras-like (AHRD V1 **-* Q9FJH0_ARATH); contains Interpro domain(s) IPR015595 Rab11-related2-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT08G03000PACid=17309479;name=POPTR_0008s03190;alias=pt027812m,estExt_Genewise1_v1.C_LG_VIII1467,Pt-RAB1.9;scaffold_8+View
PT06G12130PACid=17310687;name=POPTR_0006s12320;alias=pt019399m;scaffold_6+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29646G0061029646+View
RC29646G0063029646+View
RC30078G0041030078+View
RC30078G0042030078+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC06G015030Tc06+View
TC06G015050Tc06+View
TC00G055990Tc00-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV13G02380name=GSVIVG01016169001;chr13-View
VV13G02460name=GSVIVG01016180001;chr13-View
VV10G01640name=GSVIVG01021143001;chr10-View
VV10G01660name=GSVIVG01021145001;chr10-View


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Gene id
Species
Description
Chromosome
Strand