Anchorpoints

Gene id
AT4G18730
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT1G32375F-box/RNI-like/FBD-like domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G56390.1); Has 2073 Blast hits to 2026 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 2072; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box/RNI-like/FBD-like domains-containing protein1+View
AT5G45775Ribosomal L5P family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, vacuole; EXPRESSED IN: male gametophyte, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132), Ribosomal protein L5, conserved site (InterPro:IPR020929), Ribosomal protein L5, N-terminal (InterPro:IPR020927), Ribosomal protein L5, C-terminal (InterPro:IPR020928); BEST Arabidopsis thaliana protein match is: ribosomal protein L16B (TAIR:AT4G18730.1); Has 7854 Blast hits to 7854 proteins in 2814 species: Archae - 312; Bacteria - 5083; Metazoa - 254; Fungi - 163; Plants - 278; Viruses - 0; Other Eukaryotes - 1764 (source: NCBI BLink).;Ribosomal L5P family protein5-View
AT2G42740encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.;ribosomal protein large subunit 16A2+View
AT3G58700Ribosomal L5P family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 (InterPro:IPR002132), Ribosomal protein L5, conserved site (InterPro:IPR020929), Ribosomal protein L5, N-terminal (InterPro:IPR020927), Ribosomal protein L5, C-terminal (InterPro:IPR020928); BEST Arabidopsis thaliana protein match is: Ribosomal L5P family protein (TAIR:AT5G45775.2); Has 7854 Blast hits to 7854 proteins in 2814 species: Archae - 312; Bacteria - 5083; Metazoa - 254; Fungi - 163; Plants - 278; Viruses - 0; Other Eukaryotes - 1764 (source: NCBI BLink).;Ribosomal L5P family protein3+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL8G02660scaffold_8+View
AL7G23950scaffold_7-View
AL5G29290scaffold_5+View
AL4G30140scaffold_4+View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD3G09030Bd3-View
BD2G32640Bd2-View
BD2G06467Bd2+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00052G01470supercontig_52-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV3G18920Putative FBD-associated F-box protein At5g56410 (probable)LG3+View
FV3G1438060S ribosomal protein L11 (similar to)LG3+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM06G4246006Gm06+View
GM06G4268006Gm06-View
GM12G1580012Gm12-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ0G444880chr0+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD11G02407011-View
MD11G02410011+View
MD11G02411011+View
MD11G02417011-View
MD11G02426011+View
MD11G02427011+View
MD11G02428011+View
MD17G02049017-View
MD09G0230109-View
MD09G0211109+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME06039G00170scaffold06039+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS02G14059ribosomal protein L5, putative, expressed2+View
OS01G10820ribosomal protein L5, putative, expressed1+View
OS06G35730ribosomal protein L5, putative, expressed6-View
OS05G11710ribosomal protein L5, putative, expressed5+View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_01G09870source=BGI China;type=FgeneSH;Chr01+View
OSINDICA_02G13010source=BGI China;type=FgeneSH;Chr02+View
OSINDICA_05G09990source=BGI China;type=FgeneSH;Chr05+View
OSINDICA_05G10000source=BGI China;type=FgeneSH;Chr05+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT11G06890PACid=17310450;name=POPTR_0011s07080;alias=pt014641m,grail3.0071003601,Pt-L16.2;scaffold_11-View
PT11G06910PACid=17311769;name=POPTR_0011s07100;alias=pt014640m,estExt_Genewise1_v1.C_LG_XI3222,Pt-L16.1;scaffold_11-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30026G0012030026+View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB03G0024203chr_3+View
SB10G02171010chr_10-View
SB09G0064609chr_9+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC00G040590Tc00-View
TC06G014090Tc06-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV12G03140name=GSVIVG01020743001;chr12-View
VV10G02390name=GSVIVG01021244001;chr10+View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM09G1238060S ribosomal protein L11-1 (LOC100282010), mRNA9+View
ZM04G37150hypothetical protein LOC100193696 4+View
ZM05G2628060S ribosomal protein L11-1 (LOC100283310), mRNA5-View


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Chromosome
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