PLAZA v2.5 : colinear gene pairs

Anchorpoints

Gene id: AT4G01070
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT1G01390	UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 72B3 (TAIR:AT1G01420.1); Has 7970 Blast hits to 7908 proteins in 429 species: Archae - 0; Bacteria - 359; Metazoa - 2438; Fungi - 37; Plants - 5024; Viruses - 48; Other Eukaryotes - 64 (source: NCBI BLink).;UDP-Glycosyltransferase superfamily protein	1	-	View
AT1G01420	UDP-glucosyl transferase 72B3 (UGT72B3); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G01390.1); Has 7961 Blast hits to 7896 proteins in 480 species: Archae - 0; Bacteria - 474; Metazoa - 2294; Fungi - 32; Plants - 5027; Viruses - 70; Other Eukaryotes - 64 (source: NCBI BLink).;UDP-glucosyl transferase 72B3	1	-	View

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL1G00900		scaffold_1	+	View
AL1G00930		scaffold_1	+	View
AL6G40510		scaffold_6	+	View

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD2G43790	glucuronosyltransferase activity (Blast2GO)	Bd2	-	View
BD2G43810	UDP-galactosyltransferase activity (Blast2GO)	Bd2	+	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV7G06130	Hydroquinone glucosyltransferase (putative)	LG7	-	View
FV7G06160	Hydroquinone glucosyltransferase (putative)	LG7	-	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM19G44350	19	Gm19	+	View
GM03G41730	03	Gm03	+	View

Lotus japonicus

Gene id	Description	Chromosome	Strand	Multiplicon
LJ1G056220		chr1	-	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD01G006420		1	+	View
MD07G012280		7	+	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME03581G00920		scaffold03581	-	View
ME02658G00430		scaffold02658	-	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT7G117170	Hydroquinone glucosyltransferase (AHRD V1 **** Q9AR73); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase	7	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT14G08970	PACid=17332656;name=POPTR_0014s09160;alias=pt035939m,Pt-ADGT.1,fgenesh4_pg.C_LG_XIV000386;	scaffold_14	+	View
PT14G08980	PACid=17327884;name=POPTR_0014s09170;alias=pt035473m,estExt_Genewise1_v1.C_LG_XIV1614,Pt-ADGT.3;	scaffold_14	+	View
PT14G08990	PACid=17320268;name=POPTR_0014s09180;alias=pt035438m,estExt_Genewise1_v1.C_LG_XIV1619;	scaffold_14	+	View
PT03G12850	PACid=17340598;name=POPTR_0003s13800;alias=pt023148m,eugene3.00031105;	scaffold_3	+	View
PT02G16810	PACid=17324464;name=POPTR_0002s17000;alias=pt020371m,estExt_fgenesh4_pg.C_LG_II1536;	scaffold_2	+	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB03G028190	3	chr_3	+	View
SB03G028200	3	chr_3	-	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC03G028640		Tc03	+	View
TC03G028650		Tc03	+	View
TC03G028660		Tc03	+	View
TC01G034720		Tc01	-	View
TC01G034730		Tc01	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV15G06060	name=GSVIVG01027063001;	chr15	-	View
VV15G06070	name=GSVIVG01027064001;	chr15	-	View