Anchorpoints

Gene id
AT1G62040
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT4G21980Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced carbon starvation. Predominantly cytoplasmic with or without N starvation. Upon concanamycin A the protein accumulates in the central vacuole as punctuate structures that resemble autophagic bodies. This localization is more abundant upon N starvation.;Ubiquitin-like superfamily protein4+View
AT4G04620autophagy 8b (ATG8B); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G21980.2); Has 1515 Blast hits to 1513 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 720; Fungi - 178; Plants - 303; Viruses - 3; Other Eukaryotes - 311 (source: NCBI BLink).;Ubiquitin-like superfamily protein4-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL6G36470scaffold_6-View
AL2G03420scaffold_2-View
AL7G20400scaffold_7-View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD1G26400beta-tubulin binding, microtubule binding (Blast2GO)Bd1+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00152G00200supercontig_152+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV3G01100Autophagy-related protein 8C, Precursor (putative)LG3+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM17G0165017Gm17-View
GM15G1151015Gm15+View
GM07G3909007Gm07+View
GM09G0063009Gm09+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD05G0014305-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME06598G00170scaffold06598+View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS07G32800autophagy%2Drelated protein, putative, expressed7-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_07G25670source=BGI China;type=FgeneSH;Chr07-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT00G13720PACid=17302117;name=POPTR_0021s00620;alias=pt002202m,estExt_fgenesh4_pg.C_LG_XI0039;scaffold_21-View
PT04G01180PACid=17312129;name=POPTR_0004s01370;alias=pt007560m,gw1.IV.1606.1;scaffold_4-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29842G0081029842-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB07G0054407chr_7+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC06G019240Tc06+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV19G10630name=GSVIVG01037666001;chr19+View
VV10G00990name=GSVIVG01012719001;chr10-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM04G06530autophagy-related 8e (Atg8e), mRNA4-View


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Gene id
Species
Description
Chromosome
Strand