PLAZA v2.5 : colinear gene pairs

Anchorpoints

Gene id: AT1G20840
Organism: Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AT4G35300	tonoplast monosaccharide transporter2 (TMT2); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity; INVOLVED IN: response to fructose stimulus, response to salt stress, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: tonoplast monosaccharide transporter3 (TAIR:AT3G51490.2); Has 51368 Blast hits to 39283 proteins in 2480 species: Archae - 776; Bacteria - 26387; Metazoa - 6850; Fungi - 11680; Plants - 3625; Viruses - 0; Other Eukaryotes - 2050 (source: NCBI BLink).;tonoplast monosaccharide transporter2	4	-	View

Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id	Description	Chromosome	Strand	Multiplicon
AL7G05590		scaffold_7	+	View
AL1G22040		scaffold_1	-	View

Brachypodium distachyon

Gene id	Description	Chromosome	Strand	Multiplicon
BD1G29600	glucose transmembrane transporter activity, galactose transmembrane transporter activity, sugar:hydrogen symporter activity, fructose transmembrane transporter activity, mannose transmembrane transporter activity (Blast2GO)	Bd1	+	View
BD1G76540	glucose transmembrane transporter activity, galactose transmembrane transporter activity, sugar:hydrogen symporter activity, fructose transmembrane transporter activity, mannose transmembrane transporter activity (Blast2GO)	Bd1	-	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV1G11900	Monosaccharide-sensing protein 2 (similar to)	LG1	+	View
FV2G12300	Monosaccharide-sensing protein 2 (putative)	LG2	-	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM11G09290	11	Gm11	-	View
GM01G36150	01	Gm01	+	View
GM04G01660	04	Gm04	+	View
GM06G01750	06	Gm06	+	View

Lotus japonicus

Gene id	Description	Chromosome	Strand	Multiplicon
LJ1G034460		chr1	-	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD10G010160		10	-	View
MD02G009210		2	+	View
MD06G000600		6	+	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME02943G01220		scaffold02943	-	View
ME06512G02120		scaffold06512	-	View
ME06512G02130		scaffold06512	-	View

Oryza sativa ssp. japonica

Gene id	Description	Chromosome	Strand	Multiplicon
OS03G03680	transporter family protein, putative, expressed	3	+	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT02G00570	PACid=17338540;name=POPTR_0002s00760;alias=pt019991m,eugene3.00020052;	scaffold_2	+	View
PT04G20550	PACid=17341782;name=POPTR_0004s21690;alias=pt005987m,gw1.66.623.1;	scaffold_4	-	View
PT05G26540	PACid=17315339;name=POPTR_0005s27680;alias=pt032335m,eugene3.00051602;	scaffold_5	-	View

Ricinus communis

Gene id	Description	Chromosome	Strand	Multiplicon
RC30170G07240		30170	-	View

Sorghum bicolor

Gene id	Description	Chromosome	Strand	Multiplicon
SB10G031000	10	chr_10	-	View
SB04G038460	4	chr_4	+	View
SB04G038470	4	chr_4	+	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC02G012460		Tc02	-	View
TC08G005360		Tc08	-	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV03G03330	name=GSVIVG01023868001;	chr3	-	View
VV18G12650	name=GSVIVG01013414001;	chr18	+	View

Zea mays

Gene id	Description	Chromosome	Strand	Multiplicon
ZM05G16390	hexose transporter	5	-	View