PLAZA v2.5 : colinear gene pairs

Anchorpoints

Gene id: AL6G10710
Organism: Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id	Description	Chromosome	Strand	Multiplicon
AL6G25230		scaffold_6	+	View

Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id	Description	Chromosome	Strand	Multiplicon
AT5G10970	C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 3 (TAIR:AT5G25160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;C2H2 and C2HC zinc fingers superfamily protein	5	+	View
AT5G25160	Encodes a zinc finger protein containing only a single zinc finger.;zinc finger protein 3	5	+	View

Carica papaya

Gene id	Description	Chromosome	Strand	Multiplicon
CP00127G00080		supercontig_127	-	View

Fragaria vesca

Gene id	Description	Chromosome	Strand	Multiplicon
FV2G52100	Zinc finger protein 1 (probable)	LG2	-	View

Glycine max

Gene id	Description	Chromosome	Strand	Multiplicon
GM06G06750	06	Gm06	+	View
GM07G02880	07	Gm07	+	View
GM17G33130	17	Gm17	-	View
GM14G13360	14	Gm14	+	View
GM04G06660	04	Gm04	+	View

Lotus japonicus

Gene id	Description	Chromosome	Strand	Multiplicon
LJ5G006780		chr5	+	View

Malus domestica

Gene id	Description	Chromosome	Strand	Multiplicon
MD01G019790		1	-	View

Manihot esculenta

Gene id	Description	Chromosome	Strand	Multiplicon
ME03049G00300		scaffold03049	-	View
ME00847G02100		scaffold00847	-	View

Medicago truncatula

Gene id	Description	Chromosome	Strand	Multiplicon
MT3G106230	Zinc finger protein 1 (AHRD V1 -- B6U456_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type	3	+	View

Oryza sativa ssp. indica

Gene id	Description	Chromosome	Strand	Multiplicon
OSINDICA_02G08310	source=BGI China;type=FgeneSH;	Chr02	-	View

Populus trichocarpa

Gene id	Description	Chromosome	Strand	Multiplicon
PT06G26050	PACid=17338051;name=POPTR_0006s27760;alias=pt018472m;	scaffold_6	-	View
PT18G02130	PACid=17317269;name=POPTR_0018s02320;alias=pt008953m;	scaffold_18	-	View

Ricinus communis

Gene id	Description	Chromosome	Strand	Multiplicon
RC29848G01160		29848	+	View

Theobroma cacao

Gene id	Description	Chromosome	Strand	Multiplicon
TC09G001650		Tc09	+	View

Vitis vinifera

Gene id	Description	Chromosome	Strand	Multiplicon
VV04G12580	name=GSVIVG01035905001;	chr4	+	View