Anchorpoints
- Gene id
- AL6G02750
- Organism
- Arabidopsis lyrata
Paralogs (intra-species colinear regions)
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
Gene id
Description
Chromosome
Strand
Multiplicon
AT5G03520 RAB GTPase homolog 8C (RAB8C); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog E1E (TAIR:AT3G09900.1); Has 29771 Blast hits to 29709 proteins in 824 species: Archae - 21; Bacteria - 191; Metazoa - 15611; Fungi - 4242; Plants - 3476; Viruses - 20; Other Eukaryotes - 6210 (source: NCBI BLink).;RAB GTPase homolog 8C 5 + View AT5G03530 Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes.;RAB GTPase homolog C2A 5 - View AT3G09900 RAB GTPase homolog E1E (RABE1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 8C (TAIR:AT5G03520.1); Has 29798 Blast hits to 29728 proteins in 826 species: Archae - 21; Bacteria - 199; Metazoa - 15588; Fungi - 4257; Plants - 3488; Viruses - 20; Other Eukaryotes - 6225 (source: NCBI BLink).;RAB GTPase homolog E1E 3 + View AT3G09910 RAB GTPase homolog C2B (RABC2b); FUNCTIONS IN: GTP binding, transcription factor binding, ATP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: sepal, root, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras (InterPro:IPR013753), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase (InterPro:IPR020851), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078), Rab18 (InterPro:IPR015598); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog C2A (TAIR:AT5G03530.1); Has 29365 Blast hits to 29334 proteins in 746 species: Archae - 15; Bacteria - 117; Metazoa - 15214; Fungi - 4279; Plants - 3567; Viruses - 20; Other Eukaryotes - 6153 (source: NCBI BLink).;RAB GTPase homolog C2B 3 - View
Fragaria vesca
Gene id
Description
Chromosome
Strand
Multiplicon
FV6G50030 GTP-binding protein yptV3 (similar to) LG6 - View
Glycine max
Gene id
Description
Chromosome
Strand
Multiplicon
GM10G06780 10 Gm10 - View GM19G37020 19 Gm19 - View GM13G20970 13 Gm13 - View GM03G34330 03 Gm03 - View
Lotus japonicus
Gene id
Description
Chromosome
Strand
Multiplicon
LJ1G050070 chr1 - View
Manihot esculenta
Gene id
Description
Chromosome
Strand
Multiplicon
ME11069G00550 scaffold11069 - View ME11069G00560 scaffold11069 - View
Populus trichocarpa
Gene id
Description
Chromosome
Strand
Multiplicon
PT06G12130 PACid=17310687;name=POPTR_0006s12320;alias=pt019399m; scaffold_6 + View PT16G10260 PACid=17345643;name=POPTR_0016s10830;alias=pt003513m,Pt-ALPHA.3,estExt_fgenesh4_pm.C_LG_XVI0347; scaffold_16 - View
Ricinus communis
Gene id
Description
Chromosome
Strand
Multiplicon
RC30078G00410 30078 + View RC30078G00420 30078 + View
Theobroma cacao
Gene id
Description
Chromosome
Strand
Multiplicon
TC00G055990 Tc00 - View
Vitis vinifera
Gene id
Description
Chromosome
Strand
Multiplicon
VV08G10680 name=GSVIVG01033680001; chr8 - View VV08G10690 name=GSVIVG01033681001; chr8 + View
Arabidopsis thaliana
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT5G03520 | RAB GTPase homolog 8C (RAB8C); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog E1E (TAIR:AT3G09900.1); Has 29771 Blast hits to 29709 proteins in 824 species: Archae - 21; Bacteria - 191; Metazoa - 15611; Fungi - 4242; Plants - 3476; Viruses - 20; Other Eukaryotes - 6210 (source: NCBI BLink).;RAB GTPase homolog 8C | 5 | + | View |
| AT5G03530 | Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes.;RAB GTPase homolog C2A | 5 | - | View |
| AT3G09900 | RAB GTPase homolog E1E (RABE1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 8C (TAIR:AT5G03520.1); Has 29798 Blast hits to 29728 proteins in 826 species: Archae - 21; Bacteria - 199; Metazoa - 15588; Fungi - 4257; Plants - 3488; Viruses - 20; Other Eukaryotes - 6225 (source: NCBI BLink).;RAB GTPase homolog E1E | 3 | + | View |
| AT3G09910 | RAB GTPase homolog C2B (RABC2b); FUNCTIONS IN: GTP binding, transcription factor binding, ATP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: sepal, root, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras (InterPro:IPR013753), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase (InterPro:IPR020851), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078), Rab18 (InterPro:IPR015598); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog C2A (TAIR:AT5G03530.1); Has 29365 Blast hits to 29334 proteins in 746 species: Archae - 15; Bacteria - 117; Metazoa - 15214; Fungi - 4279; Plants - 3567; Viruses - 20; Other Eukaryotes - 6153 (source: NCBI BLink).;RAB GTPase homolog C2B | 3 | - | View |
Fragaria vesca
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| FV6G50030 | GTP-binding protein yptV3 (similar to) | LG6 | - | View |
Glycine max
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GM10G06780 | 10 | Gm10 | - | View |
| GM19G37020 | 19 | Gm19 | - | View |
| GM13G20970 | 13 | Gm13 | - | View |
| GM03G34330 | 03 | Gm03 | - | View |
Lotus japonicus
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| LJ1G050070 | chr1 | - | View |
Manihot esculenta
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ME11069G00550 | scaffold11069 | - | View | |
| ME11069G00560 | scaffold11069 | - | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT06G12130 | PACid=17310687;name=POPTR_0006s12320;alias=pt019399m; | scaffold_6 | + | View |
| PT16G10260 | PACid=17345643;name=POPTR_0016s10830;alias=pt003513m,Pt-ALPHA.3,estExt_fgenesh4_pm.C_LG_XVI0347; | scaffold_16 | - | View |
Ricinus communis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| RC30078G00410 | 30078 | + | View | |
| RC30078G00420 | 30078 | + | View |
Theobroma cacao
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TC00G055990 | Tc00 | - | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV08G10680 | name=GSVIVG01033680001; | chr8 | - | View |
| VV08G10690 | name=GSVIVG01033681001; | chr8 | + | View |