Anchorpoints

Gene id
AL3G38540
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL8G34610scaffold_8-View
AL7G04940scaffold_7-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT4G35840RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: NEP-interacting protein 2 (TAIR:AT2G17730.1); Has 8964 Blast hits to 8940 proteins in 268 species: Archae - 0; Bacteria - 2; Metazoa - 2132; Fungi - 649; Plants - 5031; Viruses - 28; Other Eukaryotes - 1122 (source: NCBI BLink).;RING/U-box superfamily protein4+View
AT5G66070RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: NEP-interacting protein 2 (TAIR:AT2G17730.1); Has 9487 Blast hits to 9461 proteins in 285 species: Archae - 0; Bacteria - 10; Metazoa - 2332; Fungi - 815; Plants - 5049; Viruses - 44; Other Eukaryotes - 1237 (source: NCBI BLink).;RING/U-box superfamily protein5+View

Brachypodium distachyon

Gene id Description Chromosome Strand Multiplicon
BD3G51330RING, subfamily zinc finger, C3HC4 type domain containing proteinBd3-View
BD3G51600RING, subfamily RING-H2 finger protein, putativeBd3+View
BD3G51777Bd3-View
BD3G51810RING, subfamily zinc finger (C3HC4-type RING finger) family proteinBd3-View
BD3G51980RING, subfamily RING-H2 finger protein, putativeBd3-View
BD3G52050RING, subfamily RING-H2 finger protein ATL3J, putativeBd3+View
BD3G52160RING, subfamily zinc finger (C3HC4-type RING finger) family proteinBd3-View
BD3G58350RING, subfamily zinc finger, C3HC4 type domain containing proteinBd3-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00006G03040supercontig_6-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV1G12980RING-H2 finger protein ATL4M (putative)LG1+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM10G4352010Gm10-View
GM01G3676001Gm01+View
GM11G0854011Gm11-View
GM04G0234004Gm04-View
GM02G0500002Gm02+View
GM20G1614020Gm20-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ4G013840chr4-View
LJ2G022270chr2+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD12G01445012-View
MD16G00645016+View
MD15G01760015+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME07520G03030scaffold07520-View
ME06512G01570scaffold06512-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT8G074900RING-H2 finger protein ATL4M (AHRD V1 ***- Q8GT75); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type8+View
MT1G026070RING finger protein 43 (AHRD V1 *-*- Q68DV7); contains Interpro domain(s) IPR001841 Zinc finger, RING-type1+View
MT5G022920RING-H2 finger protein ATL4M (AHRD V1 ***- Q8GT75); contains Interpro domain(s) IPR001841 Zinc finger, RING-type5-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS09G37050RING%2DH2 finger protein ATL2B, putative, expressed9-View

Oryza sativa ssp. indica

Gene id Description Chromosome Strand Multiplicon
OSINDICA_09G29360source=BGI China;type=FgeneSH;Chr09-View
OSINDICA_06G10910source=BGI China;type=FgeneSH;Chr06-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT05G10810PACid=17307751;name=POPTR_0005s11000;alias=pt033752m,Pt-ZF1.1,fgenesh4_pm.C_scaffold_57000011;scaffold_5+View
PT07G04770PACid=17336727;name=POPTR_0007s04960;alias=pt025420m,estExt_fgenesh4_pg.C_LG_VII0442;scaffold_7-View

Sorghum bicolor

Gene id Description Chromosome Strand Multiplicon
SB02G0315002chr_2-View

Selaginella moellendorffii

Gene id Description Chromosome Strand Multiplicon
SM00018G01940scaffold_18+View
SM00018G02010scaffold_18+View
SM00018G02020scaffold_18+View
SM00018G02030scaffold_18+View
SM00018G02050scaffold_18+View
SM00018G02060scaffold_18+View
SM00018G02100scaffold_18-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC01G001110Tc01+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV18G01210name=GSVIVG01008754001;chr18+View
VV18G01220name=GSVIVG01008756001;chr18-View

Zea mays

Gene id Description Chromosome Strand Multiplicon
ZM05G359905+View
ZM05G15840hypothetical protein LOC100383370 5+View
ZM07G20590RING-H2 finger protein ATL2A 7-View
ZM07G31000RING-H2 finger protein ATL2B 7+View


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Gene id
Species
Description
Chromosome
Strand