Anchorpoints

Gene id
AL1G29780
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL7G24270scaffold_7+View
AL4G19240scaffold_4-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT1G28550RAB GTPase homolog A1I (RABA1i); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, flower, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1H (TAIR:AT2G33870.1); Has 26472 Blast hits to 26426 proteins in 734 species: Archae - 24; Bacteria - 151; Metazoa - 13774; Fungi - 3933; Plants - 2930; Viruses - 20; Other Eukaryotes - 5640 (source: NCBI BLink).;RAB GTPase homolog A1I1-View
AT4G18430RAB GTPase homolog A1E (RABA1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1F (TAIR:AT5G60860.1); Has 27831 Blast hits to 27775 proteins in 750 species: Archae - 32; Bacteria - 149; Metazoa - 14651; Fungi - 4104; Plants - 3007; Viruses - 20; Other Eukaryotes - 5868 (source: NCBI BLink).;RAB GTPase homolog A1E4-View
AT2G33870RAB GTPase homolog A1H (ArRABA1h); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1I (TAIR:AT1G28550.1); Has 27076 Blast hits to 27025 proteins in 750 species: Archae - 25; Bacteria - 157; Metazoa - 14072; Fungi - 4066; Plants - 2934; Viruses - 20; Other Eukaryotes - 5802 (source: NCBI BLink).;RAB GTPase homolog A1H2-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00007G00110supercontig_7-View
CP00007G00140supercontig_7-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV3G13420Ras-related protein Rab11B (similar to)LG3-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM07G3242007Gm07-View
GM07G3244007Gm07-View
GM13G2414013Gm13+View
GM13G2416013Gm13+View
GM12G1407012Gm12-View
GM12G1409012Gm12-View
GM06G4383006Gm06+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ3G027530chr3-View
LJ3G027550chr3-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD05G0049505-View
MD10G02299010+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME04851G00670scaffold04851-View
ME04851G00690scaffold04851-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT4G079350GTP-binding protein ras-like (AHRD V1 **-* Q9FJH0_ARATH); contains Interpro domain(s) IPR015595 Rab11-related4-View
MT2G014990GTP-binding protein ras-like (AHRD V1 **-* Q9FJH0_ARATH); contains Interpro domain(s) IPR015595 Rab11-related2-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT11G05780PACid=17338032;name=POPTR_0011s05970;alias=pt014554m,Pt-RAB11.12,estExt_fgenesh4_pg.C_1870018;scaffold_11-View
PT11G05800PACid=17313201;name=POPTR_0011s05990;alias=pt014612m,Pt-ARAC2.1,estExt_fgenesh4_pg.C_1870020;scaffold_11-View
PT04G04880PACid=17335475;name=POPTR_0004s05070;alias=pt007922m;scaffold_4-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29900G0016029900-View
RC29900G0018029900-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC06G015030Tc06+View
TC06G015050Tc06+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV10G01640name=GSVIVG01021143001;chr10-View
VV10G01660name=GSVIVG01021145001;chr10-View


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Description
Chromosome
Strand