Sub-family  

Parent family
HOM000883
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
cpa
Carica papaya (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)



The gene family ORTHO021200 has 5 genes in 5 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 5 records out of 5 total, starting on record 1, ending on 5

gene_id species description comment strand chr outlier
AL5G00890 aly name=fgenesh2_kg.5__88__AT2G01810.1;pid=484096;prot=eq;tid=484096 + scaffold_5 No
AT2G01810 ath RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 637 Blast hits to 622 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 216; Plants - 250; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).;RING/FYVE/PHD zinc finger superfamily protein transcript=eq;prot=eq; + 2 No
CP00002G01520 cpa name=evm.TU.supercontig_2.152;pid=evm.TU.supercontig_2.152;prot=eq;transcript=eq - supercontig_2 No
PT08G13460 ptr PACid=17344805;name=POPTR_0008s13650;alias=pt026643m,eugene3.00081285; transcript=eq;prot=eq;protein_id=17344805; + scaffold_8 No
RC29968G00120 rco name=29968.m000643;gene=29968.t000012;note=29968.t000012;transcript=eq;prot=eq + 29968 No
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