Sub-family  

Parent family
HOM000032
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
gma
Glycine max (1 gene)
mdo
Malus domestica (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
ota
Ostreococcus tauri (1 gene)
vca
Volvox carteri (1 gene)



The gene family ORTHO016602 has 8 genes in 7 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 8 records out of 8 total, starting on record 1, ending on 8

gene_id species description comment strand chr outlier
AL7G24270 aly name=fgenesh2_kg.7__2451__AT4G18430.1;pid=493018;prot=eq;tid=493018 + scaffold_7 No
AT4G18430 ath RAB GTPase homolog A1E (RABA1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1F (TAIR:AT5G60860.1); Has 27831 Blast hits to 27775 proteins in 750 species: Archae - 32; Bacteria - 149; Metazoa - 14651; Fungi - 4104; Plants - 3007; Viruses - 20; Other Eukaryotes - 5868 (source: NCBI BLink).;RAB GTPase homolog A1E transcript=eq;prot=eq; - 4 No
GM07G32420 gma 07 pid=16268491;transcript=eq;prot=eq;name=Glyma07g32420.1 - Gm07 No
MD00G046830 mdo transcript=eq;prot=eq;pid=MDP0000120052;tid=MDP0000120052;contig=MDC001960.137 + MDC001960.137 No
MD00G046850 mdo transcript=eq;prot=eq;pid=MDP0000163714;tid=MDP0000163714;contig=MDC001960.241 - MDC001960.241 No
OS05G48980 osa ras%2Drelated protein, putative, expressed transcript=eq;prot=eq; - 5 No
OT02G03250 ota Rab1 small GTPase from the Rab subfamily (IC); name=OT02G03250;protein_id=CAL52204.1;prot=eq + chrom02 No
VC00018G01920 vca name=e_gw1.18.262.1;pid=60379;prot=eq;tid=60379 - scaffold_18 No
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