Sub-family 
- Id
- ORTHO016094
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM000818
- Keywords
-
Overview of gene family content
- cpa
- Carica papaya (1 gene)
- gma
- Glycine max (2 genes)
- mes
- Manihot esculenta (1 gene)
- ppa
- Physcomitrella patens (1 gene)
- ptr
- Populus trichocarpa (1 gene)
- rco
- Ricinus communis (1 gene)
- tca
- Theobroma cacao (1 gene)
- zma
- Zea mays (1 gene)
The gene family ORTHO016094 has 9 genes in 8 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.
Toolbox
Explore
- ...the local gene organization for homologous genes.
- ...the phylogenetic trees of this gene family.
- ...the expansion/depletion of species in this gene family.
View
- ...the multiple sequence alignment of the homologous gene family.
- ...the similarity heatmap of this gene family.
- ...the genome wide organization of this gene family.
- ...the functional annotation associated with this gene family.
Index of genes with 1 constraints:
- gene family : ORTHO016094
Page 1 of 1, showing 9 records out of 9 total, starting on record 1, ending on 9
gene_id | species | description | comment | strand | chr | outlier |
---|---|---|---|---|---|---|
CP00094G00690 | cpa | name=evm.TU.supercontig_94.69;pid=evm.TU.supercontig_94.69;prot=eq;transcript=eq | + | supercontig_94 | No | |
GM13G06390 | gma | 13 | pid=16289840;transcript=eq;prot=eq;name=Glyma13g06390.1 | + | Gm13 | No |
GM19G03950 | gma | 19 | pid=16311826;transcript=eq;prot=eq;name=Glyma19g03950.1 | + | Gm19 | No |
ME06609G00060 | mes | PACid=17983554;RNAname=cassava4.1_019713m;GeneName=cassava4.1_019713m.g;transcript=eq;prot=eq | + | scaffold06609 | No | |
PP00124G00080 | ppa | NULL | name=e_gw1.124.56.1,pid=135907,prot=eq,tid=135907 | - | scaffold_124 | No |
PT17G12710 | ptr | PACid=17315297;name=POPTR_0017s13090;alias=pt029853m,eugene3.00170507; | transcript=eq;prot=eq;protein_id=17315297; | + | scaffold_17 | No |
RC27623G00040 | rco | name=27623.m000138;gene=27623.t000004;note=27623.t000004;transcript=eq;prot=eq | - | 27623 | No | |
TC04G012980 | tca | RNAname=Tc04_t012980;GeneName=Tc04_g012980;transcript=eq;prot=eq | - | Tc04 | No | |
ZM03G12030 | zma | name=GRMZM2G017809;tid=GRMZM2G017809_T01;pid=GRMZM2G017809_P01;transcript=eq;prot=eq; | + | 3 | No |
<< previous
next >>