Sub-family 
- Id
- ORTHO015884
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM000013
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (1 gene)
- ath
- Arabidopsis thaliana (1 gene)
- fve
- Fragaria vesca (1 gene)
- mdo
- Malus domestica (2 genes)
- mes
- Manihot esculenta (1 gene)
- ptr
- Populus trichocarpa (1 gene)
- rco
- Ricinus communis (1 gene)
- tca
- Theobroma cacao (1 gene)
The gene family ORTHO015884 has 9 genes in 8 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : ORTHO015884
Page 1 of 1, showing 9 records out of 9 total, starting on record 1, ending on 9
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL8G00280 | aly | name=fgenesh2_kg.8__30__AT5G47610.1;pid=494214;prot=eq;tid=494214 | + | scaffold_8 | No | |
| AT5G47610 | ath | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G17245.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;RING/U-box superfamily protein | transcript=eq;prot=eq; | - | 5 | No |
| FV0G41290 | fve | RING-H2 finger protein ATL5M, Precursor (probable) | transcript=eq;prot=eq;pid=gene01835 | + | scf0512956 | No |
| MD00G215480 | mdo | transcript=eq;prot=eq;pid=MDP0000124719;tid=MDP0000124719;contig=MDC009297.162 | + | MDC009297.162 | No | |
| MD00G394140 | mdo | transcript=eq;prot=eq;pid=MDP0000210058;tid=MDP0000210058;contig=MDC017892.144 | - | MDC017892.144 | No | |
| ME03367G00010 | mes | PACid=17963855;RNAname=cassava4.1_028743m;GeneName=cassava4.1_028743m.g;transcript=eq;prot=eq | - | scaffold03367 | No | |
| PT01G44850 | ptr | PACid=17331930;name=POPTR_0001s45800;alias=pt040113m; | transcript=eq;prot=eq;protein_id=17331930; | - | scaffold_1 | No |
| RC30068G01200 | rco | name=30068.m002631;gene=30068.t000121;note=30068.t000121;transcript=eq;prot=eq | - | 30068 | No | |
| TC03G022290 | tca | RNAname=Tc03_t022290;GeneName=Tc03_g022290;transcript=eq;prot=eq | + | Tc03 | No |
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