Sub-family  

Parent family
HOM000013
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
fve
Fragaria vesca (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)



The gene family ORTHO015884 has 9 genes in 8 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 9 records out of 9 total, starting on record 1, ending on 9

gene_id species description comment strand chr outlier
AL8G00280 aly name=fgenesh2_kg.8__30__AT5G47610.1;pid=494214;prot=eq;tid=494214 + scaffold_8 No
AT5G47610 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G17245.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 5 No
FV0G41290 fve RING-H2 finger protein ATL5M, Precursor (probable) transcript=eq;prot=eq;pid=gene01835 + scf0512956 No
MD00G215480 mdo transcript=eq;prot=eq;pid=MDP0000124719;tid=MDP0000124719;contig=MDC009297.162 + MDC009297.162 No
MD00G394140 mdo transcript=eq;prot=eq;pid=MDP0000210058;tid=MDP0000210058;contig=MDC017892.144 - MDC017892.144 No
ME03367G00010 mes PACid=17963855;RNAname=cassava4.1_028743m;GeneName=cassava4.1_028743m.g;transcript=eq;prot=eq - scaffold03367 No
PT01G44850 ptr PACid=17331930;name=POPTR_0001s45800;alias=pt040113m; transcript=eq;prot=eq;protein_id=17331930; - scaffold_1 No
RC30068G01200 rco name=30068.m002631;gene=30068.t000121;note=30068.t000121;transcript=eq;prot=eq - 30068 No
TC03G022290 tca RNAname=Tc03_t022290;GeneName=Tc03_g022290;transcript=eq;prot=eq + Tc03 No
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