Sub-family  

Parent family
HOM000032
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
mdo
Malus domestica (2 genes)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)



The gene family ORTHO015257 has 10 genes in 7 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 10 records out of 10 total, starting on record 1, ending on 10

gene_id species description comment strand chr outlier
AL7G23880 aly name=fgenesh2_kg.7__2412__AT4G18800.1;pid=492979;prot=eq;tid=492979 + scaffold_7 No
AL8G02700 aly name=fgenesh2_kg.8__225__AT5G45750.1;pid=494409;prot=eq;tid=494409 - scaffold_8 No
AT4G18800 ath RAB GTPase homolog A1D (RABA1d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1C (TAIR:AT5G45750.1); Has 27980 Blast hits to 27923 proteins in 754 species: Archae - 26; Bacteria - 162; Metazoa - 14618; Fungi - 4214; Plants - 3069; Viruses - 20; Other Eukaryotes - 5871 (source: NCBI BLink).;RAB GTPase homolog A1D transcript=eq;prot=eq; - 4 No
AT5G45750 ath RAB GTPase homolog A1C (RABA1c); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, nucleus, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1D (TAIR:AT4G18800.1); Has 28355 Blast hits to 28298 proteins in 771 species: Archae - 32; Bacteria - 162; Metazoa - 14720; Fungi - 4238; Plants - 3283; Viruses - 20; Other Eukaryotes - 5900 (source: NCBI BLink).;RAB GTPase homolog A1C transcript=eq;prot=eq; + 5 No
CP00007G00910 cpa name=evm.TU.supercontig_7.91;pid=evm.TU.supercontig_7.91;prot=eq;transcript=eq - supercontig_7 No
FV3G14480 fve Ras-related protein RABA1c (putative) transcript=eq;prot=eq;pid=gene29705 - LG3 No
MD05G005850 mdo transcript=eq;prot=eq;pid=MDP0000304114;tid=MDP0000304114;contig=MDC015524.135 - 5 No
MD10G022150 mdo transcript=eq;prot=eq;pid=MDP0000519967;tid=MDP0000519967;contig=MDC037719.8 + 10 No
RC30026G00260 rco name=30026.m001462;gene=30026.t000026;note=30026.t000026;transcript=eq;prot=eq - 30026 No
TC06G013980 tca RNAname=Tc06_t013980;GeneName=Tc06_g013980;transcript=eq;prot=eq + Tc06 No
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