Sub-family  

Parent family
HOM000069
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
cpa
Carica papaya (1 gene)
mes
Manihot esculenta (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family ORTHO014621 has 11 genes in 8 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 11 records out of 11 total, starting on record 1, ending on 11

gene_id species description comment strand chr outlier
AL4G03700 aly name=fgenesh2_kg.4__308__AT2G23910.1;pid=481248;prot=eq;tid=481248 + scaffold_4 No
AL7G11090 aly name=fgenesh2_kg.7__1138__AT4G30470.1;pid=491705;prot=eq;tid=491705 - scaffold_7 No
AT2G23910 ath NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: lignin biosynthetic process, response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G30470.1); Has 3676 Blast hits to 3671 proteins in 648 species: Archae - 0; Bacteria - 619; Metazoa - 80; Fungi - 341; Plants - 1990; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink).;NAD(P)-binding Rossmann-fold superfamily protein transcript=eq;prot=eq; + 2 No
AT4G30470 ath NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G23910.1); Has 3688 Blast hits to 3683 proteins in 622 species: Archae - 2; Bacteria - 557; Metazoa - 88; Fungi - 385; Plants - 2025; Viruses - 0; Other Eukaryotes - 631 (source: NCBI BLink).;NAD(P)-binding Rossmann-fold superfamily protein transcript=eq;prot=eq; + 4 No
CP00199G00030 cpa name=evm.TU.supercontig_199.3;pid=evm.TU.supercontig_199.3;prot=eq;transcript=eq + supercontig_199 No
ME00343G00030 mes PACid=17984607;RNAname=cassava4.1_012806m;GeneName=cassava4.1_012806m.g;transcript=eq;prot=eq - scaffold00343 No
PT06G17740 ptr PACid=17311033;name=POPTR_0006s19260;alias=pt018248m,estExt_fgenesh4_pm.C_LG_VI0550; transcript=eq;prot=eq;protein_id=17311033; - scaffold_6 No
PT18G10000 ptr PACid=17344019;name=POPTR_0018s10950;alias=pt008852m,estExt_fgenesh4_pg.C_LG_XVIII0872; transcript=eq;prot=eq;protein_id=17344019; - scaffold_18 No
RC27622G00080 rco name=27622.m000153;gene=27622.t000008;note=27622.t000008;transcript=eq;prot=eq + 27622 No
TC09G015190 tca RNAname=Tc09_t015190;GeneName=Tc09_g015190;transcript=eq;prot=eq - Tc09 No
VV11G07910 vvi name=GSVIVG01023718001; transcript=eq;prot=eq;name=GSVIVG01023718001;pid=GSVIVG01023718001;tid=GSVIVT01023718001; - chr11 No
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