Sub-family  

Parent family
HOM001222
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (3 genes)
mtr
Medicago truncatula (1 gene)
ptr
Populus trichocarpa (1 gene)
tca
Theobroma cacao (1 gene)



The gene family ORTHO014058 has 12 genes in 9 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 12 records out of 12 total, starting on record 1, ending on 12

gene_id species description comment strand chr outlier
AL2G17580 aly name=fgenesh2_kg.2__1190__AT1G69330.1;pid=476060;prot=eq;tid=476060 - scaffold_2 No
AT1G69330 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G29270.2); Has 288 Blast hits to 287 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 1 No
CP00001G00960 cpa name=evm.TU.supercontig_1.96;pid=evm.TU.supercontig_1.96;prot=eq;transcript=eq + supercontig_1 No
FV0G04570 fve RING finger protein 208 (probable) transcript=eq;prot=eq;pid=gene04652 - scf0513158 No
GM01G06800 gma 01 pid=16243643;transcript=eq;prot=eq;name=Glyma01g06800.1 + Gm01 No
GM02G12720 gma 02 pid=16247879;transcript=eq;prot=eq;name=Glyma02g12720.1 + Gm02 No
MD00G315410 mdo transcript=eq;prot=eq;pid=MDP0000549038;tid=MDP0000549038;contig=MDC013369.390 + MDC013369.390 No
MD13G004210 mdo transcript=eq;prot=eq;pid=MDP0000508676;tid=MDP0000508676;contig=MDC021681.173 - 13 No
MD16G003210 mdo transcript=eq;prot=eq;pid=MDP0000735766;tid=MDP0000735766;contig=MDC015290.96 - 16 No
MT5G043680 mtr Expressed protein (Fragment) (AHRD V1 *-*- B3VZ55_POPTN); contains Interpro domain(s) IPR001841 Zinc finger, RING-type transcript=eq;prot=eq;pid=Medtr5g043680.1; + 5 No
PT10G15710 ptr PACid=17333347;name=POPTR_0010s16850;alias=pt012483m,fgenesh4_pg.C_LG_X001443; transcript=eq;prot=eq;protein_id=17333347; - scaffold_10 No
TC02G032440 tca RNAname=Tc02_t032440;GeneName=Tc02_g032440;transcript=eq;prot=eq - Tc02 No
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