Sub-family 
- Id
- ORTHO013579
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM000039
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (1 gene)
- ath
- Arabidopsis thaliana (1 gene)
- mdo
- Malus domestica (3 genes)
- osa
- Oryza sativa ssp. japonica (1 gene)
- ppa
- Physcomitrella patens (6 genes)
- zma
- Zea mays (1 gene)
The gene family ORTHO013579 has 13 genes in 6 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.
Toolbox
Explore
- ...the local gene organization for homologous genes.
- ...the phylogenetic trees of this gene family.
- ...the expansion/depletion of species in this gene family.
View
- ...the multiple sequence alignment of the homologous gene family.
- ...the similarity heatmap of this gene family.
- ...the genome wide organization of this gene family.
- ...the functional annotation associated with this gene family.
Index of genes with 1 constraints:
- gene family : ORTHO013579
Page 1 of 1, showing 13 records out of 13 total, starting on record 1, ending on 13
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL4G30210 | aly | name=fgenesh1_pm.C_scaffold_4002019;pid=321962;prot=eq;tid=321962 | + | scaffold_4 | No | |
| AT2G42830 | ath | AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG).;K-box region and MADS-box transcription factor family protein | transcript=eq;prot=eq; | + | 2 | No |
| MD00G192720 | mdo | transcript=eq;prot=eq;pid=MDP0000280009;tid=MDP0000280009;contig=MDC008267.290 | - | MDC008267.290 | No | |
| MD00G289730 | mdo | transcript=eq;prot=eq;pid=MDP0000197683;tid=MDP0000197683;contig=MDC012374.219 | - | MDC012374.219 | No | |
| MD00G289740 | mdo | transcript=eq;prot=eq;pid=MDP0000326906;tid=MDP0000326906;contig=MDC012374.220 | + | MDC012374.220 | No | |
| OS04G49150 | osa | OsMADS17 %2D MADS%2Dbox family gene with MIKCc type%2Dbox, expressed | transcript=eq;prot=eq; | + | 4 | No |
| PP00026G00530 | ppa | NULL | name=estExt_fgenesh1_kg.C_260002,pid=109598,prot=eq,tid=109598 | + | scaffold_26 | No |
| PP00055G01630 | ppa | NULL | name=e_gw1.55.13.1,pid=125652,prot=eq,tid=125652 | - | scaffold_55 | No |
| PP00118G01060 | ppa | NULL | name=fgenesh1_pg.scaffold_118000119,pid=83991,prot=eq,tid=83991 | - | scaffold_118 | No |
| PP00171G00290 | ppa | NULL | name=e_gw1.171.4.1,pid=140819,prot=eq,tid=140819 | - | scaffold_171 | No |
| PP00209G00690 | ppa | NULL | name=e_gw1.209.37.1,pid=143861,prot=eq,tid=143861 | - | scaffold_209 | No |
| PP00267G00260 | ppa | NULL | name=fgenesh1_pg.scaffold_267000029,pid=94754,prot=eq,tid=94754 | + | scaffold_267 | No |
| ZM01G08000 | zma | MADS-box transcription factor 1 | name=GRMZM2G099522;tid=GRMZM2G099522_T01;pid=GRMZM2G099522_P01;transcript=eq;prot=eq; | - | 1 | No |
<< previous
next >>