Sub-family  

Parent family
HOM002172
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
ota
Ostreococcus tauri (1 gene)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family ORTHO013498 has 13 genes in 13 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 13 records out of 13 total, starting on record 1, ending on 13

gene_id species description comment strand chr outlier
AL1G19010 aly name=scaffold_102016.1;pid=889222;prot=eq;tid=920735 + scaffold_1 No
AT1G18090 ath 5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974), XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G29630.2); Has 2134 Blast hits to 2045 proteins in 397 species: Archae - 265; Bacteria - 69; Metazoa - 518; Fungi - 574; Plants - 189; Viruses - 16; Other Eukaryotes - 503 (source: NCBI BLink).;5'-3' exonuclease family protein transcript=eq;prot=eq; + 1 No
BD1G41770 bdi single-stranded DNA specific 5'-3' exodeoxyribonuclease activity, double-stranded DNA specific 5'-3' exodeoxyribonuclease activity (Blast2GO) pid=Bradi1g41770.1;tid=Bradi1g41770.1;GeneName=Bradi1g41770;transcript=eq;prot=eq - Bd1 No
CP00003G04300 cpa name=evm.TU.supercontig_3.430;pid=evm.TU.supercontig_3.430;prot=eq;transcript=eq + supercontig_3 No
FV5G16970 fve Exonuclease 1 (probable) transcript=eq;prot=eq;pid=gene09411 - LG5 No
GM07G11320 gma 07 pid=16266949;transcript=eq;prot=eq;name=Glyma07g11320.1 - Gm07 No
ME01284G00020 mes PACid=17966163;RNAname=cassava4.1_030657m;GeneName=cassava4.1_030657m.g;transcript=eq;prot=eq + scaffold01284 No
MRCC299_07G03450 mrcc299 name=gw2.07.261.1;pid=69661;prot=eq;tid=69661;transcript=eq + Chr_07 No
OL15G01410 olu NULL name=gwEuk.15.170.1,pid=5620,prot=eq,tid=5620 - Chr_15 No
OT16G01840 ota 5'-3' exonuclease (ISS); name=OT16G01840;protein_id=CAL58183.1;prot=eq - chrom16 No
RC29654G00030 rco name=29654.m000301;gene=29654.t000003;note=29654.t000003;transcript=eq;prot=eq - 29654 No
TC03G004840 tca RNAname=Tc03_t004840;GeneName=Tc03_g004840;transcript=eq;prot=eq - Tc03 No
VV17G06880 vvi name=GSVIVG01008397001; transcript=eq;prot=eq;name=GSVIVG01008397001;pid=GSVIVG01008397001;tid=GSVIVT01008397001; - chr17 No
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