Sub-family 
- Id
- ORTHO013197
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM003081
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (1 gene)
- ath
- Arabidopsis thaliana (1 gene)
- cpa
- Carica papaya (1 gene)
- gma
- Glycine max (2 genes)
- lja
- Lotus japonicus (1 gene)
- mes
- Manihot esculenta (2 genes)
- mtr
- Medicago truncatula (1 gene)
- ptr
- Populus trichocarpa (2 genes)
- rco
- Ricinus communis (1 gene)
- tca
- Theobroma cacao (1 gene)
- vvi
- Vitis vinifera (1 gene)
The gene family ORTHO013197 has 14 genes in 11 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.
Toolbox
Explore
- ...the local gene organization for homologous genes.
- ...the phylogenetic trees of this gene family.
- ...the expansion/depletion of species in this gene family.
View
- ...the multiple sequence alignment of the homologous gene family.
- ...the similarity heatmap of this gene family.
- ...the genome wide organization of this gene family.
- ...the functional annotation associated with this gene family.
Index of genes with 1 constraints:
- gene family : ORTHO013197
Page 1 of 1, showing 14 records out of 14 total, starting on record 1, ending on 14
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL8G29580 | aly | name=fgenesh2_kg.8__2301__AT5G63050.1;pid=496485;prot=eq;tid=496485 | + | scaffold_8 | No | |
| AT5G63050 | ath | embryo defective 2759 (EMB2759); Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;embryo defective 2759 | transcript=eq;prot=eq; | + | 5 | No |
| CP00153G00060 | cpa | name=evm.TU.supercontig_153.6;pid=evm.TU.supercontig_153.6;prot=eq;transcript=eq | - | supercontig_153 | No | |
| GM04G35910 | gma | 04 | pid=16256886;transcript=eq;prot=eq;name=Glyma04g35910.1 | - | Gm04 | No |
| GM06G19030 | gma | 06 | pid=16263470;transcript=eq;prot=eq;name=Glyma06g19030.1 | + | Gm06 | No |
| LJ0G080100 | lja | partial;prot=eq;transcript=eq;scaffold=LjSGA_026717;name=LjSGA_026717.1 | + | LjSGA_026717 | No | |
| ME03410G00150 | mes | PACid=17972931;RNAname=cassava4.1_011099m;GeneName=cassava4.1_011099m.g;transcript=eq;prot=eq | - | scaffold03410 | No | |
| ME12794G00830 | mes | PACid=17974023;RNAname=cassava4.1_011394m;GeneName=cassava4.1_011394m.g;transcript=eq;prot=eq | + | scaffold12794 | No | |
| MT3G077490 | mtr | PBng110 (AHRD V1 *-*- Q8W436_9FABA) | transcript=eq;prot=eq;pid=Medtr3g077490.1; | + | 3 | No |
| PT12G08480 | ptr | PACid=17330303;name=POPTR_0012s09050;alias=pt016024m; | transcript=eq;prot=eq;protein_id=17330303; | + | scaffold_12 | No |
| PT15G08170 | ptr | PACid=17325657;name=POPTR_0015s09120;alias=pt000760m,eugene3.00150591; | transcript=eq;prot=eq;protein_id=17325657; | - | scaffold_15 | No |
| RC30147G05900 | rco | name=30147.m013917;gene=30147.t000188;note=30147.t000188;transcript=eq;prot=eq | + | 30147 | No | |
| TC03G001670 | tca | RNAname=Tc03_t001670;GeneName=Tc03_g001670;transcript=eq;prot=eq | - | Tc03 | No | |
| VV17G01420 | vvi | name=GSVIVG01007704001; | transcript=eq;prot=eq;name=GSVIVG01007704001;pid=GSVIVG01007704001;tid=GSVIVT01007704001; | - | chr17 | No |
<< previous
next >>