Sub-family  

Parent family
HOM001955
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
gma
Glycine max (2 genes)
mes
Manihot esculenta (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO013178 has 14 genes in 13 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 14 records out of 14 total, starting on record 1, ending on 14

gene_id species description comment strand chr outlier
AL8G06080 aly name=fgenesh2_kg.8__427__AT5G43920.1;pid=494611;prot=eq;tid=494611 - scaffold_8 No
AT5G43920 ath transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G08560.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;transducin family protein / WD-40 repeat family protein transcript=eq;prot=eq; + 5 No
BD3G28200 bdi pid=Bradi3g28200.1;tid=Bradi3g28200.1;GeneName=Bradi3g28200;transcript=eq;prot=eq - Bd3 No
CP00087G00540 cpa name=evm.TU.supercontig_87.54;pid=evm.TU.supercontig_87.54;prot=eq;transcript=eq - supercontig_87 No
GM03G32630 gma 03 pid=16253094;transcript=eq;prot=eq;name=Glyma03g32630.1 - Gm03 No
GM19G35380 gma 19 pid=16313846;transcript=eq;prot=eq;name=Glyma19g35380.1 - Gm19 No
ME06825G00480 mes PACid=17971648;RNAname=cassava4.1_005051m;GeneName=cassava4.1_005051m.g;transcript=eq;prot=eq + scaffold06825 No
OS10G32770 osa WD repeat%2Dcontaining protein, putative, expressed transcript=eq;prot=eq; - 10 No
OSINDICA_10G23160 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC031093; - Chr10 No
PT14G18400 ptr PACid=17308171;name=POPTR_0014s18590;alias=pt035673m; transcript=eq;prot=eq;protein_id=17308171; + scaffold_14 No
RC29885G00040 rco name=29885.m000140;gene=29885.t000004;note=29885.t000004;transcript=eq;prot=eq + 29885 No
SB01G019860 sbi 1 prot=eq;pid=5029012;tid=5029012 + chr_1 No
VV07G11920 vvi name=GSVIVG01028456001; transcript=eq;prot=eq;name=GSVIVG01028456001;pid=GSVIVG01028456001;tid=GSVIVT01028456001; - chr7 No
ZM01G42520 zma name=GRMZM2G097640;tid=GRMZM2G097640_T01;pid=GRMZM2G097640_P01;transcript=eq;prot=eq; - 1 No
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