Sub-family  

Parent family
HOM000171
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
cpa
Carica papaya (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family ORTHO013085 has 14 genes in 12 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 14 records out of 14 total, starting on record 1, ending on 14

gene_id species description comment strand chr outlier
AL6G04580 aly name=fgenesh1_pm.C_scaffold_6000361;pid=325141;prot=eq;tid=325141 + scaffold_6 No
AT5G05070 ath DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT2G40990.1); Has 5095 Blast hits to 5086 proteins in 252 species: Archae - 0; Bacteria - 0; Metazoa - 2194; Fungi - 760; Plants - 842; Viruses - 0; Other Eukaryotes - 1299 (source: NCBI BLink).;DHHC-type zinc finger family protein transcript=eq;prot=eq; + 5 No
CP00092G00590 cpa name=evm.TU.supercontig_92.59;pid=evm.TU.supercontig_92.59;prot=eq;transcript=eq - supercontig_92 No
GM03G27420 gma 03 pid=16252500;transcript=eq;prot=eq;name=Glyma03g27420.1 - Gm03 No
GM19G30380 gma 19 pid=16313287;transcript=eq;prot=eq;name=Glyma19g30380.1 - Gm19 No
LJ1G043020 lja prot=eq;transcript=eq;scaffold=CM0098;name=chr1.CM0098.230.nc + chr1 No
MD00G284160 mdo transcript=eq;prot=eq;pid=MDP0000126821;tid=MDP0000126821;contig=MDC012139.217 + MDC012139.217 No
ME01584G00040 mes PACid=17976082;RNAname=cassava4.1_023852m;GeneName=cassava4.1_023852m.g;transcript=eq;prot=eq + scaffold01584 No
MT7G088360 mtr Palmitoyltransferase PFA4 (AHRD V1 *--* Q5AGV7); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type transcript=eq;prot=eq;pid=Medtr7g088360.1; - 7 No
PT06G02640 ptr PACid=17317300;name=POPTR_0006s02830;alias=pt017913m,eugene3.00060261; transcript=eq;prot=eq;protein_id=17317300; - scaffold_6 No
PT16G02400 ptr PACid=17312822;name=POPTR_0016s02590;alias=pt003096m; transcript=eq;prot=eq;protein_id=17312822; - scaffold_16 No
RC30045G00120 rco name=30045.m000482;gene=30045.t000014;note=30045.t000014;transcript=eq;prot=eq + 30045 No
TC00G067600 tca RNAname=Tc00_t067600;GeneName=Tc00_g067600;transcript=eq;prot=eq - Tc00 No
VV08G04170 vvi name=GSVIVG01025843001; transcript=eq;prot=eq;name=GSVIVG01025843001;pid=GSVIVG01025843001;tid=GSVIVT01025843001; + chr8 No
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