Sub-family  

Parent family
HOM000155
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family ORTHO012578 has 15 genes in 12 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 15 records out of 15 total, starting on record 1, ending on 15

gene_id species description comment strand chr outlier
AL6G02730 aly name=scaffold_600279.1;pid=908222;prot=eq;tid=939735 + scaffold_6 No
AT5G03510 ath C2H2-type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT5G04390.1); Has 1636 Blast hits to 1504 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 699; Fungi - 0; Plants - 911; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).;C2H2-type zinc finger family protein transcript=eq;prot=eq; + 5 No
CP00092G00920 cpa name=evm.TU.supercontig_92.92;pid=evm.TU.supercontig_92.92;prot=eq;transcript=eq - supercontig_92 No
FV6G49990 fve Zinc finger protein 1 (probable) transcript=eq;prot=eq;pid=gene09798 - LG6 No
GM03G34320 gma 03 pid=16253295;transcript=eq;prot=eq;name=Glyma03g34320.1 + Gm03 No
GM19G37010 gma 19 pid=16314036;transcript=eq;prot=eq;name=Glyma19g37010.1 + Gm19 No
LJ1G050060 lja prot=eq;transcript=eq;scaffold=CM0012;name=chr1.CM0012.460.nc + chr1 No
MD00G005960 mdo transcript=eq;prot=eq;pid=MDP0000467211;tid=MDP0000467211;contig=MDC000219.189 + MDC000219.189 No
MD12G010080 mdo transcript=eq;prot=eq;pid=MDP0000204390;tid=MDP0000204390;contig=MDC015250.74 - 12 No
ME03002G00030 mes PACid=17972483;RNAname=cassava4.1_033732m;GeneName=cassava4.1_033732m.g;transcript=eq;prot=eq + scaffold03002 No
ME11069G00530 mes PACid=17980463;RNAname=cassava4.1_032832m;GeneName=cassava4.1_032832m.g;transcript=eq;prot=eq + scaffold11069 No
PT16G10220 ptr PACid=17317595;name=POPTR_0016s10790;alias=pt003294m,eugene3.00160925; transcript=eq;prot=eq;protein_id=17317595; + scaffold_16 No
RC30078G00440 rco name=30078.m002253;gene=30078.t000046;note=30078.t000046;transcript=eq;prot=eq - 30078 No
TC00G055970 tca RNAname=Tc00_t055970;GeneName=Tc00_g055970;transcript=eq;prot=eq + Tc00 No
VV08G10660 vvi name=GSVIVG01033678001; transcript=eq;prot=eq;name=GSVIVG01033678001;pid=GSVIVG01033678001;tid=GSVIVT01033678001; - chr8 No
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