Sub-family  

Parent family
HOM000422
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family ORTHO012433 has 15 genes in 12 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 15 records out of 15 total, starting on record 1, ending on 15

gene_id species description comment strand chr outlier
AL2G17190 aly name=fgenesh2_kg.2__1149__AT1G68910.1;pid=476019;prot=eq;tid=476019 - scaffold_2 No
AT1G68910 ath Encodes one of the WPP domain-interacting proteins (WIT1/AT5G11390, WIT2/AT1G68910) required for RanGAP nuclear envelope association in root tip cells. Ran GTPase plays essential roles in multiple cellular processes, including nucleocytoplasmic transport, spindle formation, and postmitotic nuclear envelope reassembly. The cytoplasmic Ran GTPase activating protein RanGAP is critical to establish a functional RanGTP/RanGDP gradient across the nuclear envelope and is associated with the outer surface of the nuclear envelope in metazoan and higher plant cells. Arabidopsis thaliana RanGAP association with the root tip nuclear envelope requires a family of likely plant-specific nucleoporins combining coiled-coil and transmembrane domains (CC-TMD) and WPP domain-interacting proteins (WIPs). WIT1 and WIT2 have been identified as a second family of CC-TMD proteins, structurally similar, yet clearly distinct from the WIP family, that is required for RanGAP nuclear envelop association in root tip cells.;WPP domain-interacting protein 2 transcript=eq;prot=eq; - 1 No
CP00570G00030 cpa name=evm.TU.supercontig_570.3;pid=evm.TU.supercontig_570.3;prot=eq;transcript=eq + supercontig_570 No
FV0G03140 fve WPP domain-interacting tail-anchored protein 2 (probable) transcript=eq;prot=eq;pid=gene04511 - scf0513158 No
GM01G09420 gma 01 pid=16243866;transcript=eq;prot=eq;name=Glyma01g09420.1 + Gm01 No
GM02G13880 gma 02 pid=16248011;transcript=eq;prot=eq;name=Glyma02g13880.1 + Gm02 No
LJ2G014120 lja prot=eq;transcript=eq;scaffold=CM0124;name=chr2.CM0124.430.nc + chr2 No
MD00G504710 mdo transcript=eq;prot=eq;pid=MDP0000228053;tid=MDP0000228053;contig=MDC027868.28 + MDC027868.28 No
MD13G003540 mdo transcript=eq;prot=eq;pid=MDP0000322427;tid=MDP0000322427;contig=MDC026359.31 - 13 No
MD16G002390 mdo transcript=eq;prot=eq;pid=MDP0000128831;tid=MDP0000128831;contig=MDC015802.258 - 16 No
ME06656G00560 mes PACid=17962725;RNAname=cassava4.1_021762m;GeneName=cassava4.1_021762m.g;transcript=eq;prot=eq - scaffold06656 No
PT10G13450 ptr PACid=17334659;name=POPTR_0010s14590;alias=pt011390m; transcript=eq;prot=eq;protein_id=17334659; - scaffold_10 No
RC30138G00510 rco name=30138.m003879;gene=30138.t000053;note=30138.t000053;transcript=eq;prot=eq - 30138 No
TC00G052580 tca RNAname=Tc00_t052580;GeneName=Tc00_g052580;transcript=eq;prot=eq - Tc00 No
VV01G02360 vvi name=GSVIVG01010127001; transcript=eq;prot=eq;name=GSVIVG01010127001;pid=GSVIVG01010127001;tid=GSVIVT01010127001; + chr1 No
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