Sub-family  

Parent family
HOM000560
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
mes
Manihot esculenta (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO012409 has 15 genes in 14 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 15 records out of 15 total, starting on record 1, ending on 15

gene_id species description comment strand chr outlier
AL1G36670 aly name=fgenesh2_kg.1__3598__AT1G31300.2;pid=473644;prot=eq;tid=473644 - scaffold_1 No
AT1G31300 ath TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT4G19645.2); Has 633 Blast hits to 633 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 278; Fungi - 146; Plants - 152; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).;TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein transcript=eq;prot=eq; + 1 No
BD1G12880 bdi pid=Bradi1g12880.3;tid=Bradi1g12880.3;GeneName=Bradi1g12880;transcript=eq;prot=eq + Bd1 No
CP00135G00450 cpa name=evm.TU.supercontig_135.45;pid=evm.TU.supercontig_135.45;prot=eq;transcript=eq + supercontig_135 No
ME00510G00030 mes PACid=17972597;RNAname=cassava4.1_013646m;GeneName=cassava4.1_013646m.g;transcript=eq;prot=eq + scaffold00510 No
OS03G46410 osa transmembrane protein 56, putative, expressed transcript=eq;prot=eq; - 3 No
OSINDICA_03G44480 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC007817; - Chr03 No
PT12G11300 ptr PACid=17302891;name=POPTR_0012s11870;alias=pt016162m; transcript=eq;prot=eq;protein_id=17302891; - scaffold_12 No
PT15G11540 ptr PACid=17330474;name=POPTR_0015s12490;alias=pt000908m,eugene3.00150927; transcript=eq;prot=eq;protein_id=17330474; - scaffold_15 No
RC30125G00010 rco name=30125.m001244;gene=30125.t000001;note=30125.t000001;transcript=eq;prot=eq + 30125 No
SB01G012470 sbi 1 prot=eq;pid=5048417;tid=5048417 + chr_1 No
SM00001G04310 smo proteinId=77830;transcriptId=77830;name=e_gw1.1.1785.1;transcript=eq;prot=eq - scaffold_1 No
TC06G011460 tca RNAname=Tc06_t011460;GeneName=Tc06_g011460;transcript=eq;prot=eq - Tc06 No
VV10G07170 vvi name=GSVIVG01026279001; transcript=eq;prot=eq;name=GSVIVG01026279001;pid=GSVIVG01026279001;tid=GSVIVT01026279001; + chr10 No
ZM05G06740 zma hypothetical protein LOC100272920 name=GRMZM2G016184;tid=GRMZM2G016184_T02;pid=GRMZM2G016184_P02;transcript=eq;prot=eq; + 5 No
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