Sub-family  

Parent family
HOM004017
 
Keywords


Overview of gene family content




ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO012146 has 16 genes in 13 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 16 records out of 16 total, starting on record 1, ending on 16

gene_id species description comment strand chr outlier
AT1G77250 ath RING/FYVE/PHD-type zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 9 (TAIR:AT3G01460.1); Has 5001 Blast hits to 3477 proteins in 217 species: Archae - 2; Bacteria - 0; Metazoa - 3203; Fungi - 426; Plants - 950; Viruses - 0; Other Eukaryotes - 420 (source: NCBI BLink).;RING/FYVE/PHD-type zinc finger family protein transcript=eq;prot=eq; - 1 No
BD3G13210 bdi acetyltransferase activity, ubiquitin-protein ligase activity, nucleoside-triphosphatase activity (Blast2GO) pid=Bradi3g13210.1;tid=Bradi3g13210.1;GeneName=Bradi3g13210;transcript=eq;prot=eq - Bd3 No
CP00064G01510 cpa name=evm.TU.supercontig_64.151;pid=evm.TU.supercontig_64.151;prot=eq;transcript=eq + supercontig_64 No
FV2G30490 fve Zinc finger protein ubi-d4 A (xReq A) (probable) transcript=eq;prot=eq;pid=gene10964 + LG2 No
GM06G12450 gma 06 pid=16262672;transcript=eq;prot=eq;name=Glyma06g12450.1 + Gm06 No
MD08G016770 mdo transcript=eq;prot=eq;pid=MDP0000318994;tid=MDP0000318994;contig=MDC041183.9 + 8 No
MD15G006930 mdo transcript=eq;prot=eq;pid=MDP0000263717;tid=MDP0000263717;contig=MDC000847.564 - 15 No
ME07238G00790 mes PACid=17991405;RNAname=cassava4.1_029872m;GeneName=cassava4.1_029872m.g;transcript=eq;prot=eq + scaffold07238 No
OS08G01420 osa PHD%2Dfinger domain containing protein, putative, expressed transcript=eq;prot=eq; - 8 No
PT02G07550 ptr PACid=17308150;name=POPTR_0002s07740;alias=pt020144m,fgenesh4_pg.C_LG_II000707; transcript=eq;prot=eq;protein_id=17308150; - scaffold_2 No
PT05G19480 ptr PACid=17305319;name=POPTR_0005s20620;alias=pt032651m,eugene3.00050912; transcript=eq;prot=eq;protein_id=17305319; + scaffold_5 No
RC29648G00500 rco name=29648.m001963;gene=29648.t000050;note=29648.t000050;transcript=eq;prot=eq - 29648 No
TC08G010490 tca RNAname=Tc08_t010490;GeneName=Tc08_g010490;transcript=eq;prot=eq - Tc08 No
VV18G01490 vvi name=GSVIVG01008795001; transcript=eq;prot=eq;name=GSVIVG01008795001;pid=GSVIVG01008795001;tid=GSVIVT01008795001; - chr18 No
ZM04G09110 zma LOC100281389 name=GRMZM2G059266;tid=GRMZM2G059266_T01;pid=GRMZM2G059266_P01;transcript=eq;prot=eq; - 4 No
ZM06G00310 zma hypothetical protein LOC100383733 name=GRMZM2G039895;tid=GRMZM2G039895_T01;pid=GRMZM2G039895_P01;transcript=eq;prot=eq; - 6 No
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