Sub-family  

Parent family
HOM001947
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mes
Manihot esculenta (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO011975 has 16 genes in 15 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 16 records out of 16 total, starting on record 1, ending on 16

gene_id species description comment strand chr outlier
AL5G05650 aly name=fgenesh2_kg.5__464__AT3G26900.2;pid=484472;prot=eq;tid=484472 - scaffold_5 No
AT3G26900 ath shikimate kinase like 1 (SKL1); FUNCTIONS IN: shikimate kinase activity, ATP binding; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase 1 (TAIR:AT2G21940.5); Has 3815 Blast hits to 3815 proteins in 1373 species: Archae - 6; Bacteria - 2903; Metazoa - 33; Fungi - 1; Plants - 140; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink).;shikimate kinase like 1 transcript=eq;prot=eq; - 3 No
BD2G03680 bdi ATP binding (Blast2GO) pid=Bradi2g03680.1;tid=Bradi2g03680.1;GeneName=Bradi2g03680;transcript=eq;prot=eq + Bd2 No
CP00070G01020 cpa name=evm.TU.supercontig_70.102;pid=evm.TU.supercontig_70.102;prot=eq;transcript=eq - supercontig_70 No
FV6G51520 fve Shikimate kinase, chloroplastic, Precursor (probable) transcript=eq;prot=eq;pid=gene01367 + LG6 No
GM02G08050 gma 02 pid=16247362;transcript=eq;prot=eq;name=Glyma02g08050.1 - Gm02 No
GM16G27060 gma 16 pid=16303034;transcript=eq;prot=eq;name=Glyma16g27060.1 - Gm16 No
LJ1G008480 lja prot=eq;transcript=eq;scaffold=LjT14B18;name=chr1.LjT14B18.20.nc + chr1 No
ME07378G00010 mes PACid=17962861;RNAname=cassava4.1_012682m;GeneName=cassava4.1_012682m.g;transcript=eq;prot=eq + scaffold07378 No
OS01G01302 osa shikimate kinase, putative, expressed transcript=eq;prot=eq; + 1 No
PT17G08780 ptr PACid=17336802;name=POPTR_0017s08970;alias=pt029507m,estExt_fgenesh4_pg.C_880051,SK1; transcript=eq;prot=eq;protein_id=17336802; - scaffold_17 No
RC30131G01620 rco name=30131.m007013;gene=30131.t000164;note=30131.t000164;transcript=eq;prot=eq - 30131 No
SB08G018630 sbi 8 prot=eq;pid=5059678;tid=5059678 + chr_8 No
TC04G004710 tca RNAname=Tc04_t004710;GeneName=Tc04_g004710;transcript=eq;prot=eq + Tc04 No
VV14G14000 vvi name=GSVIVG01033029001; transcript=eq;prot=eq;name=GSVIVG01033029001;pid=GSVIVG01033029001;tid=GSVIVT01033029001; - chr14 No
ZM01G26660 zma shikimate kinase family protein name=GRMZM2G119249;tid=GRMZM2G119249_T01;pid=GRMZM2G119249_P01;transcript=eq;prot=eq; + 1 No
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