Sub-family 
- Id
- ORTHO011975
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM001947
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (1 gene)
- ath
- Arabidopsis thaliana (1 gene)
- bdi
- Brachypodium distachyon (1 gene)
- cpa
- Carica papaya (1 gene)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (2 genes)
- lja
- Lotus japonicus (1 gene)
- mes
- Manihot esculenta (1 gene)
- osa
- Oryza sativa ssp. japonica (1 gene)
- ptr
- Populus trichocarpa (1 gene)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (1 gene)
- tca
- Theobroma cacao (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (1 gene)
The gene family ORTHO011975 has 16 genes in 15 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : ORTHO011975
Page 1 of 1, showing 16 records out of 16 total, starting on record 1, ending on 16
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL5G05650 | aly | name=fgenesh2_kg.5__464__AT3G26900.2;pid=484472;prot=eq;tid=484472 | - | scaffold_5 | No | |
| AT3G26900 | ath | shikimate kinase like 1 (SKL1); FUNCTIONS IN: shikimate kinase activity, ATP binding; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase 1 (TAIR:AT2G21940.5); Has 3815 Blast hits to 3815 proteins in 1373 species: Archae - 6; Bacteria - 2903; Metazoa - 33; Fungi - 1; Plants - 140; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink).;shikimate kinase like 1 | transcript=eq;prot=eq; | - | 3 | No |
| BD2G03680 | bdi | ATP binding (Blast2GO) | pid=Bradi2g03680.1;tid=Bradi2g03680.1;GeneName=Bradi2g03680;transcript=eq;prot=eq | + | Bd2 | No |
| CP00070G01020 | cpa | name=evm.TU.supercontig_70.102;pid=evm.TU.supercontig_70.102;prot=eq;transcript=eq | - | supercontig_70 | No | |
| FV6G51520 | fve | Shikimate kinase, chloroplastic, Precursor (probable) | transcript=eq;prot=eq;pid=gene01367 | + | LG6 | No |
| GM02G08050 | gma | 02 | pid=16247362;transcript=eq;prot=eq;name=Glyma02g08050.1 | - | Gm02 | No |
| GM16G27060 | gma | 16 | pid=16303034;transcript=eq;prot=eq;name=Glyma16g27060.1 | - | Gm16 | No |
| LJ1G008480 | lja | prot=eq;transcript=eq;scaffold=LjT14B18;name=chr1.LjT14B18.20.nc | + | chr1 | No | |
| ME07378G00010 | mes | PACid=17962861;RNAname=cassava4.1_012682m;GeneName=cassava4.1_012682m.g;transcript=eq;prot=eq | + | scaffold07378 | No | |
| OS01G01302 | osa | shikimate kinase, putative, expressed | transcript=eq;prot=eq; | + | 1 | No |
| PT17G08780 | ptr | PACid=17336802;name=POPTR_0017s08970;alias=pt029507m,estExt_fgenesh4_pg.C_880051,SK1; | transcript=eq;prot=eq;protein_id=17336802; | - | scaffold_17 | No |
| RC30131G01620 | rco | name=30131.m007013;gene=30131.t000164;note=30131.t000164;transcript=eq;prot=eq | - | 30131 | No | |
| SB08G018630 | sbi | 8 | prot=eq;pid=5059678;tid=5059678 | + | chr_8 | No |
| TC04G004710 | tca | RNAname=Tc04_t004710;GeneName=Tc04_g004710;transcript=eq;prot=eq | + | Tc04 | No | |
| VV14G14000 | vvi | name=GSVIVG01033029001; | transcript=eq;prot=eq;name=GSVIVG01033029001;pid=GSVIVG01033029001;tid=GSVIVT01033029001; | - | chr14 | No |
| ZM01G26660 | zma | shikimate kinase family protein | name=GRMZM2G119249;tid=GRMZM2G119249_T01;pid=GRMZM2G119249_P01;transcript=eq;prot=eq; | + | 1 | No |
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