Sub-family  

Parent family
HOM000574
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
gma
Glycine max (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)



The gene family ORTHO011923 has 16 genes in 11 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 16 records out of 16 total, starting on record 1, ending on 16

gene_id species description comment strand chr outlier
AL3G41780 aly name=scaffold_304423.1;pid=900453;prot=eq;tid=931966 + scaffold_3 No
AL4G21530 aly name=Al_scaffold_0004_2109;pid=869946;prot=eq;tid=901459 + scaffold_4 No
AT2G36110 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G12460.1); Has 463 Blast hits to 452 proteins in 93 species: Archae - 0; Bacteria - 28; Metazoa - 189; Fungi - 6; Plants - 216; Viruses - 3; Other Eukaryotes - 21 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; + 2 No
BD1G59130 bdi DNA helicase activity (Blast2GO) pid=Bradi1g59130.1;tid=Bradi1g59130.1;GeneName=Bradi1g59130;transcript=eq;prot=eq + Bd1 No
CP00009G00300 cpa name=evm.TU.supercontig_9.30;pid=evm.TU.supercontig_9.30;prot=eq;transcript=eq + supercontig_9 No
CP00516G00020 cpa name=evm.TU.supercontig_516.2;pid=evm.TU.supercontig_516.2;prot=eq;transcript=eq + supercontig_516 No
GM09G03870 gma 09 pid=16274697;transcript=eq;prot=eq;name=Glyma09g03870.1 + Gm09 No
GM15G14810 gma 15 pid=16298808;transcript=eq;prot=eq;name=Glyma15g14810.1 + Gm15 No
ME00708G00320 mes PACid=17982678;RNAname=cassava4.1_030163m;GeneName=cassava4.1_030163m.g;transcript=eq;prot=eq + scaffold00708 No
ME01551G04580 mes PACid=17961807;RNAname=cassava4.1_024070m;GeneName=cassava4.1_024070m.g;transcript=eq;prot=eq - scaffold01551 No
MT2G033770 mtr 3-5 exonuclease/ nucleic acid binding protein (AHRD V1 ***- B6TKY2_MAIZE); contains Interpro domain(s) IPR002562 3'-5' exonuclease transcript=eq;prot=eq;pid=Medtr2g033770.1; + 2 No
OS07G02180 osa 3%2D5 exonuclease domain%2Dcontaining protein, putative, expressed transcript=eq;prot=eq; - 7 No
OSINDICA_07G01110 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC041995; - Chr07 No
RC29701G00100 rco name=29701.m000589;gene=29701.t000010;note=29701.t000010;transcript=eq;prot=eq - 29701 No
RC30116G00170 rco name=30116.m000386;gene=30116.t000017;note=30116.t000017;transcript=eq;prot=eq - 30116 No
SB02G000870 sbi 2 prot=eq;pid=5032375;tid=5032375 + chr_2 No
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