Sub-family  

Parent family
HOM001313
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mes
Manihot esculenta (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family ORTHO011835 has 16 genes in 12 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 16 records out of 16 total, starting on record 1, ending on 16

gene_id species description comment strand chr outlier
AL2G01500 aly name=fgenesh2_kg.2__120__AT1G63650.2;pid=474990;prot=eq;tid=474990 - scaffold_2 No
AL7G36380 aly name=fgenesh2_kg.7__3280__AT5G41315.1;pid=493847;prot=eq;tid=493847 - scaffold_7 No
AT1G63650 ath Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY.;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; + 1 No
AT5G41315 ath encodes a basic helix loop helix domain protein that interacts with GL1 in trichome development.;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; + 5 No
CP00537G00020 cpa name=evm.TU.supercontig_537.2;pid=evm.TU.supercontig_537.2;prot=eq;transcript=eq + supercontig_537 No
FV5G02910 fve Transcription factor GLABRA 3 (bHLH 1) (putative) transcript=eq;prot=eq;pid=gene32494 + LG5 No
GM05G37770 gma 05 pid=16261057;transcript=eq;prot=eq;name=Glyma05g37770.1 - Gm05 No
GM08G01810 gma 08 pid=16269615;transcript=eq;prot=eq;name=Glyma08g01810.1 + Gm08 No
LJ0G010650 lja prot=eq;transcript=eq;scaffold=LjSGA_008146;name=LjSGA_008146.1 - LjSGA_008146 No
ME08159G00040 mes PACid=17983970;RNAname=cassava4.1_004015m;GeneName=cassava4.1_004015m.g;transcript=eq;prot=eq - scaffold08159 No
PP00266G00170 ppa NULL name=estExt_gwp_gw1.C_2660013,pid=196438,prot=eq,tid=196438 - scaffold_266 No
PT01G09260 ptr PACid=17302258;name=POPTR_0001s09450;alias=pt037835m,gw1.I.8947.1,Pt-GL3.1; transcript=eq;prot=eq;protein_id=17302258; + scaffold_1 No
PT03G11860 ptr PACid=17302830;name=POPTR_0003s12810;alias=pt022950m,Pt-GL3.2,estExt_fgenesh4_pg.C_LG_III1049; transcript=eq;prot=eq;protein_id=17302830; + scaffold_3 No
RC30190G03910 rco name=30190.m011223;gene=30190.t000459;note=30190.t000459;transcript=eq;prot=eq + 30190 No
TC03G027500 tca RNAname=Tc03_t027500;GeneName=Tc03_g027500;transcript=eq;prot=eq + Tc03 No
VV02G06420 vvi name=GSVIVG01019750001; transcript=eq;prot=eq;name=GSVIVG01019750001;pid=GSVIVG01019750001;tid=GSVIVT01019750001; - chr2 No
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